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InviteWorkflow Entry: Calculating frequencies of gene expression levels using microarray data in MaxD
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Version created on:
15/03/10 @ 08:43:32
by:
Peter Li
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Title: Calculating frequencies of gene expression levels using microarray data in MaxD
Type: Taverna 2
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This workflow retrieves data from the MaxD microarray database and calculates the frequencies of gene expression levels using an R script
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[1] - Calculating frequencies of gene expression levels using microarray data in MaxD
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Original Uploader |
Created: 15/04/08 @ 15:37:42 | Last updated: 01/07/08 @ 17:21:18
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow starts by retrieving the names of microarray datasets from the Maxd database. The user has to select sets of control and test data for analysis using t-tests by R. A list of significant differentially expressed genes is then analysed using the Go Term Finder tool which generates a list of GO terms associated with the genes. A CSV file containing the list of significant genes is also generated.
Rating: 5.0 / 5 (1 rating) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 1 Viewed: 463 times | Downloaded: 156 times Tags (6): |
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Original Uploader |
Created: 02/07/08 @ 11:24:12 | Last updated: 02/07/08 @ 11:28:21
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow starts by retrieving the names of microarray datasets from the Maxd database. The user has to select sets of control and test data which are then analysed by the LIMMA Bioconductor package in an R script. This produces a list of significant differentially expressed genes which is then analysed using the Go Term Finder tool to generate a PDF report of the common GO terms associated with the genes. A CSV file containing the list of sign...
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 584 times | Downloaded: 224 times Tags (6): |
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Non-Information Resource URI: http://www.myexperiment.org/workflows/1125
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