Tag Results

Creator:

Peter Li

Microarray data analysis using R

Created: 02/07/08 @ 11:30:06

2 items in this pack

Comments: 0 | Viewed: 251 times |

Original Uploader

Pieter Neerincx

AffyArrayQualityAnalysis (v2)

Created: 13/03/08 @ 14:38:03 | Last updated: 13/03/08 @ 14:40:37

Credits: Pieter Neerincx Philipg

License: Creative Commons Attribution-Share Alike 3.0 License

The AffyArrayQualityAnalysis web services provide quality control for raw Affymetrix GeneChip data. They are wrappers around Philip de Groot's quality control R script to provide remote programmatic access. This example workflow demonstrates the use of the AffyArrayQualityAnalysis services. The flow is as follows: * A client executes the AffyArrayQualityAnalysis_submit service with two inputs: a User object and a collection of URLs to CEL files. * The User object contains a user ID, a passw...

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 506 times | Downloaded: 393 times

Original Uploader

Peter Li

Identification of differential genes using t-tests by R (v2)

Created: 15/04/08 @ 15:37:42 | Last updated: 01/07/08 @ 17:21:18

Credits: Peter Li

License: Creative Commons Attribution-Share Alike 3.0 License

This workflow starts by retrieving the names of microarray datasets from the Maxd database. The user has to select sets of control and test data for analysis using t-tests by R. A list of significant differentially expressed genes is then analysed using the Go Term Finder tool which generates a list of GO terms associated with the genes. A CSV file containing the list of significant genes is also generated.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 1

Viewed: 593 times | Downloaded: 376 times