This workflow uses one or more services that are deprecated as of 31st December 2012 (over 4 years ago), and may no longer function. Show details...

Get KEGG gene descriptions and pathways

Created: 2010-04-30 16:09:29      Last updated: 2010-04-30 16:12:02

This workflow takes a list of KEGG gene identifiers and supplies descriptions associated to said genes + pathways including all genes and the descriptions associated to said pathways.

The list_to_string local beanshell scripts merely transform a given list into a string of unique not-null elements separated by new lines (for batch btit use).

Note that the input is a real taverna list : multiple values must be declared as multiple values instead of a single string value with distinct identifiers separated by new lines.

This workflow is a slight modification of one made by Paul Fisher called "Get Kegg Gene information".

Information Preview

Information Run

Run this Workflow in the Taverna Workbench...

Option 1:

Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/1237/download?version=1
[ More InfoExpand ]

Run this Workflow on the cloud with OnlineHPC...

Click the link below to visit OnlineHPC
http://onlinehpc.com/workflows/editor?provider=myexperiment&workflowId=1237
[ More InfoExpand ]


Information Workflow Components

Information Authors (2)
Information Titles (2)
Information Descriptions (4)
Information Dependencies (0)
Inputs (1)
Processors (5)
Beanshells (2)
Outputs (2)
Datalinks (7)
Coordinations (0)

Information Workflow Type

Taverna 2

Information Uploader

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (2)

(People/Groups)

Information Attributions (1)

(Workflows/Files)

Information Tags (11)

Log in to add Tags

Information Shared with Groups (0)

None

Information Featured In Packs (0)

None

Log in to add to one of your Packs

Information Attributed By (0)

(Workflows/Files)

None

Information Favourited By (0)

No one

Information Statistics

 

Citations (0)

None


Version History

In chronological order:



Reviews Reviews (0)

No reviews yet

Be the first to review!



Comments Comments (0)

No comments yet

Log in to make a comment




Workflow Other workflows that use similar services (93)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.


Workflow Triplify namespace list from global search... (1)

Thumb
No description

Created: 2009-11-30 | Last updated: 2009-11-30

Credits: User Francois Belleau

Workflow Cow-Human Ortholog Pathways and Gene annot... (2)

Thumb
This workflow searches for genes which reside in a QTL (Quantitative Trait Loci) region in the cow, Bos taurus. The workflow requires an input of: a chromosome name or number; a QTL start base pair position; QTL end base pair position. Data is then extracted from BioMart to annotate each of the genes found in this region. As the Cow genome is currently unfinished, the workflow subsequently maps the cow ensembl gene ids to human orthologues. Entrez and UniProt identifiers are then identified...

Created: 2007-10-03 | Last updated: 2009-12-03