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EBI_InterProScan for Taverna 2

Workflow Entry: EBI_InterProScan for Taverna 2

Created at: 04/07/10 @ 18:33:54 Last updated: 04/07/10 @ 18:33:55

Version 1 (of 1)

Version created on: 04/07/10 @ 18:33:54 by: Alan Williams | Revision comments Expand

Title: EBI_InterProScan for Taverna 2

Type: Taverna 2

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Description

InterProScan searches a protein sequence against the protein family and domain signature databases integrated into InterPro (see http://www.ebi.ac.uk/interpro/). A set of matches to the signatures are returned, which are annotated with the corresponding InterPro and GO term assignments for these signature matches.

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Workflow Components

Authors (2)

Titles (3)

Descriptions (1)

Inputs (2)

Name	Description
Email_address	Your email address (for EBI statistics on job submissions)
Sequence_or_ID	Sequence or ID

Processors (17)

Name	Type	Description
Input_data	xmlsplitter
Get_XML_result	wsdl	See the Service entry for this web service.
Format_as_GFF	beanshell
Job_params	xmlsplitter
Get_text_result	wsdl	See the Service entry for this web service.
runInterProScan	wsdl	See the Service entry for this web service.
Content_list	xmlsplitter
Input_data_type_defaultValue	stringconstant
Get_XML_result_type_defaultValue	stringconstant
Job_params_crc_defaultValue	stringconstant
Job_params_seqtype_defaultValue	stringconstant
Job_params_goterms_defaultValue	stringconstant
Job_params_async_defaultValue	stringconstant
Get_text_result_type_defaultValue	stringconstant
checkStatus	wsdl	See the Service entry for this web service.
Unpack_text_result	localworker
Unpack_XML_result	localworker

Beanshells (1)

Name	Description	Inputs	Outputs
Format_as_GFF		interproscan_text	interproscan_gff

Outputs (5)

Name	Description
InterProScan_text_result
InterProScan_XML_result
Job_ID
InterProScan_GFF
status

Datalinks (23)

Source	Sink
Sequence_or_ID	Input_data:content
Input_data_type_defaultValue:value	Input_data:type
runInterProScan:jobid	Get_XML_result:jobid
Get_XML_result_type_defaultValue:value	Get_XML_result:type
Unpack_text_result:string	Format_as_GFF:interproscan_text
Job_params_seqtype_defaultValue:value	Job_params:seqtype
Job_params_crc_defaultValue:value	Job_params:crc
Job_params_goterms_defaultValue:value	Job_params:goterms
Job_params_async_defaultValue:value	Job_params:async
Email_address	Job_params:email
Get_text_result_type_defaultValue:value	Get_text_result:type
runInterProScan:jobid	Get_text_result:jobid
Content_list:output	runInterProScan:content
Job_params:output	runInterProScan:params
Input_data:output	Content_list:WSArrayofData
runInterProScan:jobid	checkStatus:jobid
Get_text_result:result	Unpack_text_result:bytes
Get_XML_result:result	Unpack_XML_result:bytes
Unpack_text_result:string	InterProScan_text_result
Unpack_XML_result:string	InterProScan_XML_result
runInterProScan:jobid	Job_ID
Format_as_GFF:interproscan_gff	InterProScan_GFF
checkStatus:status	status

Coordinations (2)

Controller	Target
checkStatus	Get_text_result
checkStatus	Get_XML_result

Information Workflow Type

Taverna 2

Information Original Uploader

Alan Williams

Information License

All versions of this Workflow are licensed under:

Information Credits (1)

(People/Groups)

Alan Williams

Information Attributions (0)

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None

Information Tags (2)

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Information Shared with Groups (1)

myGrid

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Information Ratings (0)

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Information Attributed By (0)

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Information Favourited By (0)

No one

Information Statistics

124 viewings

398 downloads

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Citations (0)

None

Version History

Earliest Version:
[1] - EBI_InterProScan for Taverna 2

Created on: Sunday 04 July 2010 @ 18:33:54 (GMT)

Created by: Alan Williams

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Other workflows that use similar services (17)

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Taverna 2

Original Uploader

Stian Soiland-Reyes

EBI_InterProScan for Taverna 2 (v2)

Created: 26/01/10 @ 14:46:07 | Last updated: 26/01/10 @ 14:46:08

Credits: Stian Soiland-Reyes Paolo Katy Wolstencroft Hamish McWilliam

Attributions: EBI InterproScan T2 EBI_InterProScan

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Perform an InterProScan analysis of a protein sequence using the EBI’s WSInterProScan service (see http://www.ebi.ac.uk/Tools/webservices/services/interproscan). The input sequence to use and the user e-mail address are inputs, the other parameters for the analysis (see Job_params) are allowed to default. InterProScan searches a protein sequence against the protein family and domain signature databases integrated into InterPro (see http://www.ebi.ac.uk/interpro/). A set of matches to the sig...

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 175 times | Downloaded: 122 times

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