Workflow Entry: EBI FASTA with prompts

Created at: 30/05/08 @ 23:53:16 Last updated: 02/06/08 @ 21:31:42

Version 3 (latest) (of 3)

Version created on: 30/05/08 @ 23:53:16 by: Hamish McWilliam | Revision comments Expand

Last edited on: 02/06/08 @ 21:31:41 by: Hamish McWilliam

Title: EBI FASTA with prompts

Type: Taverna 1

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Description

Run a FASTA analysis using the EBI’s WSFasta service (see http://www.ebi.ac.uk/Tools/webservices/services/fasta). This workflow wraps the EBI_FASTA workflow to provide a basic user interface which prompts for the required inputs: sequence, database, FASTA program and user e-mail. Other parameters (e.g. matrix, gap penalties, etc.) are allowed to default.

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Option 1:

Launch in Taverna

Note: you need to have both the WHIP Launcher and the Taverna myExperiment/WHIP plugin installed on your machine for this to work. See here for information.

Option 2:

Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/200/download?version=3
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Workflow Components

Inputs (0)

Processors (7)

Name	Type	Description
Make_database_list	local	List of available databases.
Select_database	local	Select the required database.
Select_FASTA_program	local	Select the required FASTA program.
Make_FASTA_program_list	local	List of available FASTA programs.
Ask_for_email	local	Ask for the user's e-mail address.
Ask_for_sequence	local	Ask for the query sequence, either as a sequence identifier in database:identifer format (e.g. uniprot:wap_rat) or the actual sequence (fasta format recommended).
Nested_Workflow	workflow

Outputs (1)

Name	Description
FASTA_report	Plain text FASTA report.

Links (7)

Sink	Source
Nested_Workflow:E-mail	Ask_for_email:answer
Nested_Workflow:Sequence_or_ID	Ask_for_sequence:answer
Select_FASTA_program:valueList	Make_FASTA_program_list:split
Select_database:valueList	Make_database_list:split
FASTA_report	Nested_Workflow:FASTA_Text_Result
Nested_Workflow:FASTA_Program	Select_FASTA_program:answer
Nested_Workflow:Database	Select_database:answer