Log in
Register
Give us Feedback
InviteWorkflow Entry: EBI FASTA with prompts
| Citations (0) | Version History | Reviews (0) | Comments (0) |
 Version 3 (latest)
(of 3)
|
Version created on:
30/05/08 @ 23:53:16
by:
Hamish McWilliam
|
Revision comments 
Last edited on: 06/12/10 @ 10:53:23 by: Hamish McWilliam
Title: EBI FASTA with prompts
Type: Taverna 1
Preview
(Click on the image to get the full size)
Download Scalable Diagram (SVG)
Description
Run a FASTA analysis using the EBI’s WSFasta service (see http://www.ebi.ac.uk/Tools/webservices/services/fasta). This workflow wraps the EBI_FASTA workflow to provide a basic user interface which prompts for the required inputs: sequence, database, FASTA program and user e-mail. Other parameters (e.g. matrix, gap penalties, etc.) are allowed to default.
Note: the WSFasta service used by this workflow is deprecated as of 21st September 2010 and should not be used in any new development. This service is will be retired during 2011. EBI's replacement FASTA services (REST or SOAP) should be used instead.
Download
Run
Run this Workflow in the Taverna Workbench...
Option 1:
Launch in TavernaNote: you need to have both the WHIP Launcher and the Taverna myExperiment/WHIP plugin installed on your machine for this to work. See here for information.
Option 2:
Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/200/download?version=3
[ More Info ]
Workflow Components
Workflow Type
Log in to add Tags
Shared with Groups (0)
None
Current:
0.0 / 5
(0 ratings)
Log in to rate and see breakdown of ratings
Statistics
None
Earliest Version:
[1] - EBI FASTA with prompts
Previous Versions:
[2] - EBI FASTA with prompts
Latest Version:
[3] - EBI FASTA with prompts
Reviews
(0)
Other workflows that use similar services
(2)
|
Original Uploader |
Created: 30/05/08 @ 23:50:46 | Last updated: 06/12/10 @ 10:52:25
Credits:
License: Creative Commons Attribution 3.0 Unported License
Run a FASTA or SSEARCH sequence similarity search using the EBI's WSFasta service (see http://www.ebi.ac.uk/Tools/webservices/services/fasta).
Note: the WSFasta service used by this workflow is deprecated as of 21st September 2010 and should not be used in any new development. This service is will be retired during 2011. EBI's replacement FASTA services (REST or SOAP) should be used instead.
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 86 times | Downloaded: 49 times Tags (6): |
 View
 Download (v1)
|
|
Original Uploader |
Created: 01/06/08 @ 12:20:29
Credits:
Attributions:
License: Creative Commons Attribution 3.0 Unported License
Transmembrane domain prediction using EMBOSS tmap with an input sequence alignment of homolouges:
Sequence similarity search (SSS) to find homologues
Fetch sequences of hits
Multiple sequence alignment (MSA) of hit sequences
EMBOSS tmap with alignment from 3.
Uses the EBI web services:
WSFasta (see http://www.ebi.ac.uk/Tools/webservices/services/fasta)
WSDbfetch (see http://www.ebi.ac.uk/Tools/webservices/services/dbfetch)
WSClustalW2 (see http://www.ebi.ac.uk/Tools/webservices/servic...
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 190 times | Downloaded: 57 times Tags (16): |
View
Download (v1)
|
Linked Data
Non-Information Resource URI: http://www.myexperiment.org/workflows/200
Alternative Formats
Copyright © 2007 - 2011 The University of Manchester and University of Southampton
No comments yet
Log in to make a comment