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BLAST using DDBJ service

Workflow Entry: BLAST using DDBJ service

Created at: 03/10/07 @ 18:36:06 Last updated: 03/12/09 @ 16:31:20

Version 2 (latest) (of 2)

Version created on: 03/10/07 @ 18:36:06 by: Paul Fisher | Revision comments Expand

Last edited on: 03/12/09 @ 16:31:21 by: Paul Fisher

Title: BLAST using DDBJ service

Type: Taverna 1

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Description

Perform a sequence similarity search using the BLAST algorithm through the DDBJ web service.

Example input for this service are given below.

query:

>MySequence

program:

blastp

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Run

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Option 1:

Launch in Taverna

Note: you need to have both the WHIP Launcher and the Taverna myExperiment/WHIP plugin installed on your machine for this to work. See here for information.

Option 2:

Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/23/download?version=2
[ More Info Expand ]

Workflow Components

Inputs (3)

Name	Description
program
database
query_seq

Processors (1)

Name	Type	Description
blast_ddbj	arbitrarywsdl	Execute Blast See the Service entry for this web service.

Beanshells (0)

Outputs (1)

Name	Description
text_blast_out

Links (4)

Source	Sink
database	blast_ddbj:database
program	blast_ddbj:program
query_seq	blast_ddbj:query
blast_ddbj:Result	text_blast_out

Coordinations (0)

Information Workflow Type

Taverna 1

Information Original Uploader

Paul Fisher

Information License

All versions of this Workflow are licensed under:

Information Credits (0)

(People/Groups)

None

Information Attributions (0)

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None

Information Tags (5)

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Information Shared with Groups (0)

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Information Featured In Packs (0)

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Information Ratings (2)

Current:

4.5 / 5

(2 ratings)

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Information Attributed By (6)

(Workflows/Files)

Information Favourited By (0)

No one

Information Statistics

2305 viewings

1905 downloads

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Citations (0)

None

Version History

Earliest Version:
[1] - BLAST using DDBJ service

Created on: Wednesday 03 October 2007 @ 18:36:06 (GMT)

Created by: Paul Fisher

Revision comments:

None

Latest Version:
[2] - BLAST using DDBJ service

Created on: Wednesday 03 October 2007 @ 18:36:06 (GMT)

Created by: Paul Fisher

Last edited on: Thursday 03 December 2009 @ 16:31:21 (GMT)

Last edited by: Paul Fisher

Revision comments:

None

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Comments (1)

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Liyinji	Saturday 21 August 2010 @ 11:25:27 (GMT)
	this%20is%20my%20comment

Other workflows that use similar services (50)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.

Taverna 1

Original Uploader

Lebreton

retrieve protein sequence and do a high speed BLAST from DDBJ Web services (v1)

Created: 01/09/10 @ 17:16:24 | Last updated: 01/09/10 @ 17:18:45

Credits: Lebreton

Attributions: retrieve protein sequence and do a high speed BLAST and extract position from DDBJ Web services

License: Creative Commons Attribution-Share Alike 3.0 Unported License

retrieve protein sequence and do a high speed BLAST from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example accession : Q9NRA8 database : ddbjbct program : tblastn param : -b 100 -v 100

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 18 times | Downloaded: 12 times

Tags (6):