Workflow Entry: Multiple Blastp

Created at: 20/11/07 @ 16:58:38 Last updated: 10/01/08 @ 12:09:38

Version 2 (latest) (of 2)

Version created on: 20/11/07 @ 16:58:38 by: Kieren Lythgow | Revision comments Expand

Last edited on: 10/01/08 @ 12:09:38 by: Kieren Lythgow

Title: Multiple Blastp

Type: Taverna 1

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Description

This is a workflow to automate multiple BLASTp jobs on a large list of protein sequences in FASTA format.

Download

Download Workflow File/Package (SCUFL)

Run

Run this Workflow in the Taverna Workbench...

Option 1:

Launch in Taverna

Note: you need to have both the WHIP Launcher and the Taverna myExperiment/WHIP plugin installed on your machine for this to work. See here for information.

Option 2:

Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/90/download?version=2
[ More Info Expand ]

Workflow Components

Inputs (1)

Name	Description
Protein_sequences

Processors (7)

Name	Type	Description
Split_string_into_list	local
Concatenate_two_strings	local
Program	stringconstant
Regex	stringconstant
Database	stringconstant
searchSimple	arbitrarywsdl	Execute Blast
Remove_first_character	beanshell

Outputs (1)

Name	Description
Blast_reports

Links (9)

Sink	Source
searchSimple:query	Concatenate_two_strings:output
searchSimple:database	Database:value
searchSimple:program	Program:value
Remove_first_character:input	Protein_sequences
Concatenate_two_strings:string1	Regex:value
Split_string_into_list:regex	Regex:value
Split_string_into_list:string	Remove_first_character:fasta
Concatenate_two_strings:string2	Split_string_into_list:split
Blast_reports	searchSimple:Result