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Blob INSD.mod.dtd

Created: 2011-10-06 03:49:45 | Last updated: 2011-10-06 04:06:07

Credits: User Mutanthumb

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file is required for converting the GenBank gbk file into an XML. This file needs to be save to Taverna folder: (Default location on Mac): /Applications/Taverna 2.3.0.app/Contents/Resources/Java

File type: Trident (Package)

Comments: 0 | Viewed: 19 times | Downloaded: 15 times

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Blob agave.dtd

Created: 2011-10-06 03:48:27 | Last updated: 2011-10-06 04:05:28

Credits: User Mutanthumb

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file is required for converting the GenBank gbk file into an XML. This file needs to be save to Taverna folder: (Default location on Mac): /Applications/Taverna 2.3.0.app/Contents/Resources/Java

File type: Trident (Package)

Comments: 0 | Viewed: 19 times | Downloaded: 12 times

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Blob "Elevation plot..." example output

Created: 2011-10-06 03:32:17 | Last updated: 2011-10-06 03:32:19

Credits: User Chrisser

License: Creative Commons Attribution 3.0 Unported License

This screenshot shows what output of the "Elevation plot..." workflow looks like. img, #cubbies-overlay{ -moz-transition-property: margin, box-shadow, z-index; -moz-transition-duration: 0.1s; -webkit-transition-property: margin, box-shadow, z-index; -webkit-transition-duration: 0.1s; } .cubbies-selected{ z-index: 9999; box-shadow: 3px 3px 8px -1px blue !important; cursor: pointer !important; margin: -3px 3px 3px -3px; } .cubbies-selected:active{ box-shadow: 2px 2px 5px -1px darkb...

File type: JPEG image

Comments: 0 | Viewed: 48 times | Downloaded: 30 times

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Blob "Elevation plot..." workflow, expanded view

Created: 2011-10-06 03:29:43 | Last updated: 2011-10-06 03:29:52

Credits: User Chrisser

License: Creative Commons Attribution 3.0 Unported License

this screenshot shows the entire workflow, with nested workflows expanded img, #cubbies-overlay{ -moz-transition-property: margin, box-shadow, z-index; -moz-transition-duration: 0.1s; -webkit-transition-property: margin, box-shadow, z-index; -webkit-transition-duration: 0.1s; } .cubbies-selected{ z-index: 9999; box-shadow: 3px 3px 8px -1px blue !important; cursor: pointer !important; margin: -3px 3px 3px -3px; } .cubbies-selected:active{ box-shadow: 2px 2px 5px -1px darkblue !important; ma...

File type: JPEG image

Comments: 0 | Viewed: 55 times | Downloaded: 33 times

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Blob Workflow compact

Created: 2011-10-06 03:27:24 | Last updated: 2011-10-06 03:27:29

Credits: User Chrisser

License: Creative Commons Attribution 3.0 Unported License

This screenshot shows the "Elevation plot..." workflow with the nested workflows compact. img, #cubbies-overlay{ -moz-transition-property: margin, box-shadow, z-index; -moz-transition-duration: 0.1s; -webkit-transition-property: margin, box-shadow, z-index; -webkit-transition-duration: 0.1s; } .cubbies-selected{ z-index: 9999; box-shadow: 3px 3px 8px -1px blue !important; cursor: pointer !important; margin: -3px 3px 3px -3px; } .cubbies-selected:active{ box-shadow: 2px 2px 5px -1...

File type: JPEG image

Comments: 0 | Viewed: 59 times | Downloaded: 42 times

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Blob Weather Example

Created: 2011-10-06 03:24:49 | Last updated: 2011-10-06 03:24:50

Credits: User Chrisser

License: Creative Commons Attribution 3.0 Unported License

This screenshot shows the format of the weather and location XML output by the GetWeather service. img, #cubbies-overlay{ -moz-transition-property: margin, box-shadow, z-index; -moz-transition-duration: 0.1s; -webkit-transition-property: margin, box-shadow, z-index; -webkit-transition-duration: 0.1s; } .cubbies-selected{ z-index: 9999; box-shadow: 3px 3px 8px -1px blue !important; cursor: pointer !important; margin: -3px 3px 3px -3px; } .cubbies-selected:active{ box-shadow: 2px 2px 5px -1p...

File type: JPEG image

Comments: 0 | Viewed: 48 times | Downloaded: 29 times

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Blob TestGzippedGbk4

Created: 2011-10-06 03:21:52 | Last updated: 2011-10-06 04:00:24

Credits: User Mutanthumb

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a test file to be used on my workflow. gbk.gz

File type: application/x-gzip

Comments: 0 | Viewed: 31 times | Downloaded: 18 times

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Workflow [untitled] (1)

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This workflow ...tbc img, #cubbies-overlay{ -moz-transition-property: margin, box-shadow, z-index; -moz-transition-duration: 0.1s; -webkit-transition-property: margin, box-shadow, z-index; -webkit-transition-duration: 0.1s; } .cubbies-selected{ z-index: 9999; box-shadow: 3px 3px 8px -1px blue !important; cursor: pointer !important; margin: -3px 3px 3px -3px; } .cubbies-selected:active{ box-shadow: 2px 2px 5px -1px darkblue !important; margin: -1px 1px 1px -1px; } #cubbies-overlay{ positio...

Created: 2011-10-06 | Last updated: 2011-10-06

Credits: User Chrisser

Creator

Pack Find elevation given city and country names


Created: 2011-10-06 03:06:32 | Last updated: 2011-10-06 04:15:33

This pack contains the workflows and supplemental files that I created for a project in IST600 - eScience and eResearch Workflows. This workflow accepts city and country names as user-supplied input. These value are supplied to the GetWeather webservice (http://www.webservicex.net/globalweather.asmx?WSDL), which returns an XML record of location and weather info for each recognized city. (See the uploaded photo "weather example") The XML returned from GetWeather is then searched u...

7 items in this pack

Comments: 0 | Viewed: 64 times | Downloaded: 31 times

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Blob TestGzippedGbk1

Created: 2011-10-06 01:23:35

Credits: User Mutanthumb

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File used for testing my workflow.

File type: application/x-gzip

Comments: 0 | Viewed: 31 times | Downloaded: 19 times

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Blob Time Series Data Library Citation Result

Created: 2011-10-05 15:41:16 | Last updated: 2011-10-05 16:00:18

Credits: User Trisha Adamus

Attributions: Workflow Time Series Data Graphed and Cited

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 This is an image of the citation result produced from the Time Series Data Library Graph and Citation workflow.

File type: PNG image

Comments: 0 | Viewed: 63 times | Downloaded: 34 times

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Workflow Time Series Data Graphed and Cited (1)

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This workflow uses time series data from Rob Hyndman's Time Series Data Library (TSDL) and graphs it with Google charts. It also provides the citation information with the current date. The outputs are a Google Chart and the corresponding citation information. The inputs are URL strings for two datasets provided by Rob Hyndman under the subject of Ecology. These datasets include the annual number of lynx pelts and the annual unit price of lynx pelts during the year range 1857 -1911. This...

Created: 2011-10-05 | Last updated: 2011-10-05

Credits: User Trisha Adamus User Alan Williams User Jeff adamus

Attributions: Workflow Fetch today's xkcd comic Workflow Spreadsheed Data Import Example Workflow HTML Citation Extraction Workflow Current Date Output

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Blob Google charts line chart result

Created: 2011-10-05 15:32:38 | Last updated: 2011-10-05 15:59:37

Credits: User Trisha Adamus

Attributions: Workflow Time Series Data Graphed and Cited

License: Creative Commons Attribution-Share Alike 3.0 Unported License

 This is an image of the results from the Time Series Data Library Graph and Citation workflow.  This is the Google charts image within Taverna.

File type: PNG image

Comments: 0 | Viewed: 56 times | Downloaded: 30 times

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Pack Graphing and Citing Time Series Data


Created: 2011-10-05 15:28:19 | Last updated: 2011-10-05 16:02:12

This pack includes a worflow and its results.  The workflow extracts data from the Times Series Data Library and graphs it using Google charts.  The workflow also produces a citation for the date the data was accessed.

6 items in this pack

Comments: 0 | Viewed: 67 times | Downloaded: 21 times

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Workflow Current Date Output (1)

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Returns the Current Date optionally Formatted by input. Free to copy and use by all!.

Created: 2011-10-05 | Last updated: 2011-10-05

Credits: User Jeff adamus

Workflow HTML Citation Extraction (1)

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 This workflow is a beanshell script that locates and extracts text within an html page.  It was designed to pull citation information from the website http://robjhyndman.com/TSDL/.

Created: 2011-10-05 | Last updated: 2011-10-05

Credits: User Jeff adamus

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Workflow Extracting Quantities from HyperLEDA (1)

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This workflow receives the name of the property to compare and a file with a list of names of galaxies. The property name must be the same used in the HTML file returned by the HyperLEDA service. The workflow calls to HyperLEda service, using as input the names of the galaxies in order to get a HTML file with information about each galaxy. From each HTML file, it extracts the value of the property selected by the user. The workflow uses a python tool to parse the HTML file (one for each gala...

Created: 2011-10-05 | Last updated: 2011-10-05

Pack What's the Season?


Created: 2011-10-05 05:59:24 | Last updated: 2011-10-05 06:05:50

This pack contains the Excel file for What's the Season?, the workflow itself, and the inputs/outputs used for testing. The inputs/outputs are included in a .zip file. What's the Season? will take a list of astronomical objects and check them against an Excel file. The Excel file currently contains Messier objects with magnitudes less than 6.0 (common names unless the common name is ambiguous or nonexistent, and then it goes by Messier number). It also contains really bright stars. If none o...

3 items in this pack

Comments: 0 | Viewed: 158 times | Downloaded: 25 times

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Blob What's the Season? Inputs and Outputs

Created: 2011-10-05 05:59:03 | Last updated: 2011-10-05 05:59:05

Credits: User Kayleigh Ayn Bohémier

Attributions: Workflow What's the Season?

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This .zip file contains: pythonicastro-INPUT.xml » The input data used to generate the output. pythonicastro-distgraph.png » The Google Chart comparing distances. (Unfortunately, this is a bar chart.) pythonicseasons.xml » The most important output of astronomical objects, RA, Dec, and season that's best for observing. urlchecker.txt » This output was used for checking the URL to make sure it worked.

File type: ZIP archive

Comments: 0 | Viewed: 41 times | Downloaded: 21 times

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Blob Messier Objects and Stars

Created: 2011-10-05 05:49:01 | Last updated: 2011-10-05 05:49:31

Credits: User Kayleigh Ayn Bohémier

Attributions: Workflow What's the Season?

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is the Excel spreadsheet for use with the What's the Season? workflow (see list of attributions). It contains the object name, RA, Dec, magnitude, and distance. The spreadsheet was built using the following sources. Dolan (n.d.), Frommert & Kronberg (2007), and Kronberg (1998) were consulted the most, with some RA/Dec values coming from Wikipedia.     Alpha Crucis. (2011, July 28). In Wikipedia, the free encyclopedia. Retrieved on 26 September 2011, from http://en.wikipe...

File type: application/x-crossover-xls

Comments: 0 | Viewed: 1267 times | Downloaded: 53 times

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Workflow What's the Season? (1)

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When given a list of astronomical object names, this workflow will check them against a simple Excel spreadsheet and return which season the object is best observed in. It will also compare the distances to the objects in a Google Charts bar chart. A later version of this may switch to a scatter plot, depending on whether or not this works with the Google Chart API. Running this workflow requires Python. Sys and string should be bundled in Python, but the numpy module will need to be downloa...

Created: 2011-10-05 | Last updated: 2011-10-05

Attributions: Workflow Spreadsheet Import Example

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Workflow Extract Gene Sequence with Kepler (1)

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This is a workflow which allows one to extract gene sequence information using the accession number as the input.  Multiple outputs include a file output of sequence header information, as well as one output window of base pair count, ratios and gene sequence.

Created: 2011-10-05 | Last updated: 2011-10-05

Credits: User Wdsnellg

Creator

Pack Extract Gene Sequence Information with Kepler


Created: 2011-10-05 04:58:33 | Last updated: 2011-10-05 06:11:56

This workflow and pack were designed for a class project.  The Kepler based workflow allows one to extract specific information from a gene sequence by using the accession ID as input.  By using two web services created for the DNA Data Bank of Japan (DDBJ, http://www.xml.nig.ac.jp/wabi/Method?serviceName=DDBJ&mode=methodList&lang=en), one can extract the sequence header information as an output file, as well as retrieve the sequence, base pair count, and base pair ratios in...

5 items in this pack

Comments: 0 | Viewed: 48 times | Downloaded: 20 times

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Workflow Retrieve Molecular Interactions from PSICQ... (1)

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Retrieve Molecular Interactions from PSICQUIC Services for a list of Protein Accessions in PSI-MITAB format

Created: 2011-10-05 | Last updated: 2011-10-05

Credits: User Rafael C. Jimenez

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Workflow Comparing Quantities using HyperLEDA (1)

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This workflow receives the name of the property to compare, a file with a list of names of galaxies, and a file with the list of original values of that property. The property name must be typed in the same way used in the HTML returned by HyperLEDA The workflow calls to HyperLEDA using the names of the galaxies as input, and it returns a HTML file with information about the galaxy. This file is parsed by the python tool "ExtractPropertyValues", that extracts the value of the property introdu...

Created: 2011-10-03

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