All content

Search TP53 Somatic Mutation catalogue by ... (1)

• Download

This workflow takes the intron, the effect and the TP53 somatic mutation database as input and retrieves the full TP53 somatic mutation description(s) by first retrieving two different outputs: - first output: a TP53 somatic mutation database unique IDs list associated with the input intron (done via a call to the getP53MutationIdsByIntron web service) - second otput: a TP53 somatic mutation database unique IDs list associated with the input effect (done via a call to the getP53MutationIdsB...

Created: 2010-01-15

Credits: Achille Zappa

Get TP53 Mutations By Intron (1)

• Download

This workflow takes the intron and the TP53 somatic mutation database as input and retrieve the full TP53 somatic mutation description(s) by first retrieving the TP53 somatic mutation database unique IDs associated with the input (done via a call to the getP53MutationIdsByIntron web service) and then using IDs for retrieving the full TP53 somatic mutations descriptions (done via a call to the getP53MutationsByIds web service). Special requirements on input data are: - The intron range of numb...

Created: 2010-01-15

Credits: Achille Zappa

Get TP53 Mutations By Exon (1)

• Download

This workflow takes the exon and the TP53 somatic mutation database as input and retrieve the full TP53 somatic mutation description(s) by first retrieving the TP53 somatic mutation database unique IDs associated with the input (done via a call to the getP53MutationIdsByExon web service) and then using IDs for retrieving the full TP53 somatic mutations descriptions (done via a call to the getP53MutationsByIds web service). Special requirements on input data are: - The exon range of numbers is...

Created: 2010-01-15

Credits: Achille Zappa

Get TP53 Mutation Function Entries And TP... (1)

• Download

This workflow retrieves from two different databases two distinct set of entries starting from the same inputs data (i.e. the Mutated Aminoacid encoded at the codon in which the mutation occurred, and the Codon Number where the mutation occurs). Input data: Mutant Amino Acid encoded at the codon in which the mutation occurred and Codon Number where the mutation is located. Special requirements on input data are: - the MutAA (Mutated Amino Acid) in three letters code (Gly, Ala, Trp, Phe etc.)...

Created: 2010-01-15 | Last updated: 2010-01-15

Credits: Achille Zappa

View Download

Uniqueness, Self Belonging and Intercourse in Nature...

Created: 2010-01-09 04:42:06

Credits: M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

File type: Adobe PDF

Comments: 0 | Viewed: 76 times | Downloaded: 59 times

View Download

What Happened? Are We Asking or Telling?

Created: 2010-01-02 04:12:38

Credits: M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

File type: Adobe PDF

Comments: 0 | Viewed: 51 times | Downloaded: 31 times

Fetch Dragon images from BioMoby (2)

• Download

Fetch images and annotations of snapdragons

Created: 2009-12-15 | Last updated: 2010-07-14

Credits: EdwardKawas

Retrieve sequence in EMBL format (1)

• Download

This workflow retrieves a sequence associated with its features in embl format

Created: 2009-12-15

Credits: Alan Williams

Pipelined list iteration (1)

• Download

Perform multiple iterations of services in order to show pipelining

Created: 2009-12-15

Credits: Alan Williams

GBSeq test (1)

• Download

This workflow retrieves nucleotide and protein sequences with the literature and references associated to them given a protein and a nucleotide id.

Created: 2009-12-15

Credits: Alan Williams

Fetch today's xkcd comic (1)

• Download

Use the local java plugins and some filtering operations to fetch the comic strip image from http://xkcd.com/ Based on the FetchDailyDilbert workflow.

Created: 2009-12-15

Credits: Alan Williams

Fetch PDB flatfile from RCSB server (1)

• Download

Given an identifier such as '1crn' fetches the PDB format flatfile from the RCSB

Created: 2009-12-15

Credits: Alan Williams

Demonstration of configurable iteration (1)

• Download

This workflow shows the use of the iteration strategy editor to ensure that only relevant combinations of inputs are used during an implicit iteration.

Created: 2009-12-15

Credits: Alan Williams

BiomartAndEMBOSSAnalysis (1)

• Download

Using Biomart and EMBOSS soaplab services, This workflow retrieves a number of sequences from 3 species: mouse, human, rat; align them, and returns a plot of the alignment result. Corresponding sequence ids are also returned.

Created: 2009-12-15

Credits: Alan Williams

A workflow version of the EMBOSS tutorial (1)

• Download

Designed to show the use of EMBOSS based Soaplab services from Taverna, this workflow has no inputs as all initial values are specified as string constants. A sequence set is fetched using the seqret tool, then simultaneously scanned for predicted transmembrane regions and subjected to a multiple alignment using emma. This alignment is then plotted to a set of PNG images and also used to build a profile using the prophecy and prophet tools.

Created: 2009-12-15

Credits: Alan Williams

View Download

Presentation - Socialising e-Science

Created: 2009-12-13 11:01:20 | Last updated: 2011-06-28 17:27:44

3 items in this pack

Comments: 0 | Viewed: 83 times | Downloaded: 18 times

This Pack has no tags!

View Download

Presentation - Lessons from myExperiment: Two insigh...

Created: 2009-12-13 10:58:37 | Last updated: 2009-12-13 11:06:19

2 items in this pack

Comments: 0 | Viewed: 78 times | Downloaded: 19 times

This Pack has no tags!

View Download

NeuroHub Presentation to Southampton Neuroscientists

Created: 2009-11-26 11:59:43

Credits: David R Newman

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: PowerPoint presentation

Comments: 0 | Viewed: 85 times | Downloaded: 63 times

workflow1 (1)

• Download

blast dando o ID de uma proteinablast dando o ID de uma proteina ex: database is ‘SWISS’, for program, ‘blastp’, and for ID ‘1220173blast dando o ID de uma proteina ex: database is SWISS’, for program, blastp, and for ID 1220173

Created: 2009-11-16

Credits: Jorgep

View Download

Anthropology and Parallelism: The Individual as a Un...

Created: 2009-11-15 19:52:10

Credits: M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

File type: Adobe PDF

Comments: 0 | Viewed: 77 times | Downloaded: 32 times

View

Portugal Tutorial November 2009

Created: 2009-11-14 17:14:46 | Last updated: 2009-11-16 14:09:29

8 items in this pack

Comments: 0 | Viewed: 77 times | Downloaded: 0 times

View Download

Kegg Gene Identifiers

Created: 2009-11-14 16:29:01

Credits: George

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Plain text

Comments: 0 | Viewed: 42 times | Downloaded: 26 times

View Download

Pubmed Identifiers

Created: 2009-11-14 16:23:47

Credits: George

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Plain text

Comments: 0 | Viewed: 70 times | Downloaded: 39 times

blastp using the MRS system (1)

• Download

This blastp workflow uses the blast service of MRS (http://mrs.cmbi.ru.nl). Inputs are a sequence (only amino acids, not a fasta sequence) and a database. Databases that can be used are "sprot", "uniprot", "trembl", "pdb", "refseq", "ipi" and "gpcrdb".

Created: 2009-11-10

Credits: Bas Vroling

View Download

Very simple script to fix pathway commons biopax files

Created: 2009-11-04 11:05:46

Credits: Andrea

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: application/x-perl

Comments: 0 | Viewed: 39 times | Downloaded: 33 times