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Showing 4527 results. Use the filters on the left and the search box below to refine the results.
Galaxy
Uploader
4192?size=60x60 Fr Ylebras

Workflow Tuto Galaxy 2013 : GenOuest, from Fasta to... (1)

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Create a tree from a multifastafile using ClustalW, PhylipDNAdist, PhylipNeighbor, PhylipDrawtree and Treevector, for interactive visualization in Phyloviz or static on pdf or svg format. Then, using the same multifasta file, handling sequences file, use blast on a reference genome and filter results to have sequences with more than 90% identity.

Created: 2014-03-05 | Last updated: 2014-06-10

Credits: User Ylebras

Taverna 2
Uploader
1780?size=60x60 Gb Donal Fellows

Workflow Preservation Action Plan sampler (2)

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This is an example of the structure of a SCAPE Preservation Action Plan.

Created: 2014-03-05 | Last updated: 2014-03-05

Galaxy
Uploader
4192?size=60x60 Fr Ylebras

Workflow NGS : Tuto SNP detection workflow single end (1)

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Generate pileup, Unify Genotypers and create a VCF file from FastQ files of two individuals

Created: 2014-03-04 | Last updated: 2014-06-10

Credits: User Ylebras

Galaxy
Uploader
4192?size=60x60 Fr Ylebras

Workflow Transcritomics : eQTL after data extractio... (1)

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Format raw files from Feature extraction output (Agilent array matrix file) to have individual in columns and genes in rows

Created: 2014-03-04 | Last updated: 2014-06-10

Credits: User Ylebras

Taverna 2
Uploader
1405?size=60x60 At Sven

Workflow ToMaR HDFS Input Directory Processing (2)

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This workflow allows processing an HDFS input directory using ToMaR. The "hdfs_working_dir" input port is the HDFS input directory which containes the data to be processed by ToMaR. The "toolspec" input port contains the toolspec XML describing operations that can be used (see "operation" input port). The "operation" input port defines the operation to be used in the current ToMaR job execution (see "toolspec" input port, an operation port used here must be defined in the tool specificatio...

Created: 2014-03-04 | Last updated: 2014-03-11

Credits: User Sven

Galaxy
Uploader
4192?size=60x60 Fr Ylebras

Workflow NGS : RNAseq workflow part 1 from Tophat t... (1)

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Remove duplicates from Tophat BAM output files and filter

Created: 2014-03-04 | Last updated: 2014-06-10

Credits: User Ylebras

Creator
3689?size=60x60 Es Julian Garrido
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Pack Astronomy Taverna 2.5 starter pack


Created: 2014-03-03 17:02:08 | Last updated: 2014-03-03 17:16:57

This is a set of small snippets using Astronomy Taverna. The purpose of this pack is to make the design and development of astronomy Virtual Observatory workflows easier, learning by the example. Additionally, you can find other Astronomy related workflows and snippets related to general functionalities of Taverna. 

45 items in this pack

Comments: 0 | Viewed: 96 times | Downloaded: 26 times

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Uploader
Avatar cecilia Amaya
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Blob LOGS

Created: 2014-03-02 22:34:21 | Last updated: 2014-04-18 00:54:19

Credits: User cecilia Amaya

License: Creative Commons Attribution-Share Alike 3.0 Unported License

ESTRUCTURAS CREADAS PARA LOGS:APACHE-ACCESOAPACHE-ERROSENDMAILPOSFIXKERNELSNORT FULLSNORT FAST

File type: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet

Comments: 0 | Viewed: 56 times | Downloaded: 19 times

This File has no tags!

Galaxy
Uploader
4192?size=60x60 Fr Ylebras

Workflow NGS : Mini assembly from FastQ files using... (1)

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Assemble FastQ reads with minia

Created: 2014-02-28 | Last updated: 2014-06-10

Credits: User Ylebras

Taverna 2
Uploader
3885?size=60x60 It Massimo La Rosa

Workflow pubmed abstracts from pathways (1)

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Extraction of the abstracts from pubmed pubblications related to the pathways involving the input genes

Created: 2014-02-28

Credits: User Massimo La Rosa User Antonino Fiannaca

Attributions: Workflow NCBI Gi to Kegg Pathway Descriptions Workflow Pathway to Pubmed

Galaxy
Uploader
4192?size=60x60 Fr Ylebras

Workflow NGS : Filter contamination in raw reads by ID (1)

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Filter FastQ sequences by ID

Created: 2014-02-28 | Last updated: 2014-06-10

Credits: User Ylebras

Galaxy
Uploader
4192?size=60x60 Fr Ylebras

Workflow NGS : Bowtie2 using built-in genome to dep... (1)

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Reads mapping using a built-in genome from your history, then generate pileup, base coverage, depth of coverage and summary statistics

Created: 2014-02-28 | Last updated: 2014-06-10

Credits: User Ylebras

Galaxy
Uploader
4192?size=60x60 Fr Ylebras

Workflow NGS : Bowtie2 with a genome in fasta forma... (1)

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Reads mapping using a reference genome in fasta format from your history, then generate pileup, base coverage, depth of coverage and summary statistics

Created: 2014-02-28 | Last updated: 2014-06-10

Credits: User Ylebras

Galaxy
Uploader
4192?size=60x60 Fr Ylebras

Workflow NGS : Coverage determination and visualiza... (1)

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From a BAM file and a reference genome fasta file, calculate the depth of coverage and generate pileup, interval, Base coverage as Summary statistics

Created: 2014-02-28 | Last updated: 2014-06-10

Credits: User Ylebras

Galaxy
Uploader
4192?size=60x60 Fr Ylebras

Workflow NGS : flanking SNP regions (1)

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Flank SNP regions using interval format file and a fasta reference file

Created: 2014-02-28 | Last updated: 2014-06-10

Credits: User Ylebras

Uploader
292?size=60x60 Tim Booth
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Blob Setup instructions for BioLinux updated

Created: 2014-02-27 18:14:25

Credits: User Tim Booth User Norman Morrison User Francisco Quevedo

Attributions: Blob Setup instructions for BioLinux VM

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Updated version of the instructions posted by Norman

File type: OpenDocument Text

Comments: 0 | Viewed: 22 times | Downloaded: 9 times

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Galaxy
Uploader
4192?size=60x60 Fr Ylebras

Workflow Population genomics : From Blast xml forma... (1)

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Parse Blast XML results to obtain species specifics sequences

Created: 2014-02-27 | Last updated: 2014-06-10

Credits: User Ylebras

Galaxy
Uploader
4192?size=60x60 Fr Ylebras

Workflow NGS : RNA-seq differential expression anal... (1)

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Analyse paired-end RNA-seq reads of 2 different individuals with FastQC, Tophat2, Cufflinks and Cuffdiff using a reference annotation in gtf format

Created: 2014-02-27 | Last updated: 2014-06-10

Credits: User Ylebras

Galaxy
Uploader
4192?size=60x60 Fr Ylebras

Workflow NGS : Filtrer fastq reads with N (1)

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Filter FastQ file and delete sequences with N

Created: 2014-02-27 | Last updated: 2014-06-10

Credits: User Ylebras

Galaxy
Uploader
4192?size=60x60 Fr Ylebras

Workflow Population genomics : Structure and CLUMPP (1)

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Population genomics analysis using Structure and Clumpp to cluster data

Created: 2014-02-27 | Last updated: 2014-06-10

Credits: User Ylebras

Galaxy
Uploader
4192?size=60x60 Fr Ylebras

Workflow NGS : FastQ Quality check and FastQ manipu... (1)

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Taking FastQ reads, apply FastQ groomer on sequences and generate Quality reports (FastQC, Summary statistics, boxplots) before and after filter

Created: 2014-02-27 | Last updated: 2014-06-10

Credits: User Ylebras

Taverna 2
Uploader
Avatar Ie Eoincar

Workflow Invocation of instrument location service (1)

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Invocation of the Instrument Location Service (ILS) located in Paris Observatory.

Created: 2014-02-27

Credits: User Eoincar

Taverna 2
Uploader
Avatar Ie Eoincar

Workflow Helio Feature Catalogue Invocation (1)

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Simple invocation of the helio feature catalogue using the service located at Paris Observatory

Created: 2014-02-27

Credits: User Eoincar

Taverna 2
Uploader
Avatar Ie Eoincar

Workflow Instrument Capability Service Invocation w... (1)

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This workflow is an invocation ofthe Instrument Capability Service using the HELIO plugin built by Kevin Benson

Created: 2014-02-27

Taverna 2
Uploader
Avatar Ie Eoincar

Workflow Invocation of instrument capability service (1)

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Simple invocation of the instrument capability service (ICS). Also shows what tables and table fields are available for searching.

Created: 2014-02-27

Credits: User Eoincar

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