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Creator
3366?size=60x60 Gb Norman Morrison
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Pack Taverna Tool Service


Created: 2014-02-13 17:40:54 | Last updated: 2014-02-13 17:42:58

Taverna Tool service tutorial pack

2 items in this pack

Comments: 0 | Viewed: 35 times | Downloaded: 15 times

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Uploader
292?size=60x60 Tim Booth
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Blob Rserve on Bio-Linux

Created: 2014-02-13 14:55:21

Credits: User Tim Booth

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The recommended way to run Rserve on Bio-Linux is to install the "r-cran-rserve" package - ie:$ sudo apt-get install r-cran-rserve(Note - this wasn't working on the morning of the 13th but has now been fixed in version 1.7-3-0biolinux2)If you install the library by using install.packages("Rserve") it will work but it will not get updated and will mask the system version of Rserve, which could cause you hard-to-diagnose problems down the line.  My recommendation is...

File type: Trident (Package)

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Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow loop_until_progress_complete (4)

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Loops until an asynchronous openModeller Web Service job is finished, i.e., keeps calling getProgress until it returns 100 (completed), -2 (aborted) or -3 (cancelled). NOTE: this is a "low level" component that was created to be used by other existing components, so end users may never need to use it at all.

Created: 2014-02-13 | Last updated: 2015-05-11

Uploader
3366?size=60x60 Gb Norman Morrison
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Blob An introduction to designing and executing workflows...

Created: 2014-02-13 08:46:17

Credits: User Norman Morrison User Katy Wolstencroft User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial uses Bioinformatics exercises as an introduction to designing and executing workflows with Taverna.

File type: PowerPoint presentation

Comments: 0 | Viewed: 52 times | Downloaded: 38 times

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Taverna 2
Uploader
Avatar At Kraxner

Workflow Converts any ImageMagick supported image f... (1)

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SCAPE Migration Component

Created: 2014-02-12

Credits: User Markus Plangg

Taverna 2
Uploader
3689?size=60x60 Es Julian Garrido

Workflow Curves Exploration (1)

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Exploration of curves of cubes that contain galaxy observations

Created: 2014-02-12

Credits: User Julian Garrido

Uploader
3366?size=60x60 Gb Norman Morrison
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Blob Working with the BioVeL Portal

Created: 2014-02-11 16:12:36

Credits: User Norman Morrison User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

In this exercise we will upload and run a simple workflow that we created in the previous exercises on the BioVeL portal.

File type: PowerPoint 2007 presentation

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Uploader
3366?size=60x60 Gb Norman Morrison
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Blob Setup instructions for BioLinux VM

Created: 2014-02-11 16:01:51 | Last updated: 2014-02-13 11:06:17

Credits: User Norman Morrison User quevedo79

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Version2

File type: OpenDocument Text

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Uploader
3366?size=60x60 Gb Norman Morrison
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Blob Embedding an R Script in a Workflow Exercise

Created: 2014-02-11 15:42:26

Credits: User Norman Morrison

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This exercise is designed as a problem based learning task to understand how to embed R Scripts in workflows in Taverna.

File type: PowerPoint presentation

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Uploader
3366?size=60x60 Gb Norman Morrison
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Blob Using R Shell in Taverna workbench

Created: 2014-02-11 14:55:12 | Last updated: 2014-02-13 17:54:04

Credits: User Norman Morrison User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

In this tutorial we wil perform some simple statistical analyses using the RShell processor

File type: PowerPoint presentation

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Talend
Uploader
4174?size=60x60 Ca Francois Belleau

Workflow A Talend mashup to discover PARP proteins ... (3)

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A Talend workflow to answer this specific question :What is known about PARP family proteins involved in pathway according to Reactome ?by fetching RDF data from Bio2RDF`s HGNC, UniProt REST service and EBI Reactome SPARQL endpoint, all Semantic Web public resources.

Created: 2014-02-10 | Last updated: 2014-04-07

Credits: User Francois Belleau

Uploader
3366?size=60x60 Gb Norman Morrison
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Blob Exploring the Taverna workflow engine

Created: 2014-02-10 14:45:48 | Last updated: 2014-02-10 14:46:54

Credits: User Norman Morrison User Katy Wolstencroft User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

In this tutorial we will explore the Taverna workflow engine, including: 1) iteration; 2) looping; 3) parallel invocation.

File type: PowerPoint presentation

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Uploader
3366?size=60x60 Gb Norman Morrison
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Blob An introduction to designing and executing workflows...

Created: 2014-02-06 16:42:14 | Last updated: 2014-02-06 16:44:14

Credits: User Norman Morrison User Katy Wolstencroft User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Part 2 - An introduction to designing and executing workflows with Taverna. Importing and exporting data.

File type: PowerPoint presentation

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Creator
3366?size=60x60 Gb Norman Morrison
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Pack Supplementary material for "An Introduction to Desig...


Created: 2014-02-06 16:10:58 | Last updated: 2014-02-06 16:11:35

Supplementary material for "An Introduction to Designing and Executing Workflows with Taverna - Part 2".

4 items in this pack

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Uploader
3366?size=60x60 Gb Norman Morrison
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Blob 03E_species_list_2.xls

Created: 2014-02-06 16:09:11

Credits: User Norman Morrison

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This data file is supplementary material for "An Introduction to Designing and Executing Workflows with Taverna - Part 2".

File type: Trident (Package)

Comments: 0 | Viewed: 32 times | Downloaded: 21 times

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Uploader
3366?size=60x60 Gb Norman Morrison
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Blob 03D_species_2.txt

Created: 2014-02-06 16:08:26

Credits: User Norman Morrison

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This data file is supplementary material for "An Introduction to Designing and Executing Workflows with Taverna - Part 2".

File type: Plain text

Comments: 0 | Viewed: 29 times | Downloaded: 18 times

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Uploader
3366?size=60x60 Gb Norman Morrison
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Blob 03C_species_list_1.xls

Created: 2014-02-06 16:02:27

Credits: User Norman Morrison

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This data file is supplementary material for "An Introduction to Designing and Executing Workflows with Taverna - Part 2".

File type: Trident (Package)

Comments: 0 | Viewed: 35 times | Downloaded: 17 times

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Uploader
3366?size=60x60 Gb Norman Morrison
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Blob 03B_species_1.txt

Created: 2014-02-06 15:19:41 | Last updated: 2014-02-06 16:03:18

Credits: User Norman Morrison

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This data file is supplementary material for "An Introduction to Designing and Executing Workflows with Taverna - Part 2".

File type: Plain text

Comments: 0 | Viewed: 32 times | Downloaded: 23 times

This File has no tags!

Uploader
3366?size=60x60 Gb Norman Morrison
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Blob An introduction to designing and executing workflows...

Created: 2014-02-06 14:52:19 | Last updated: 2014-02-06 16:45:12

Credits: User Norman Morrison User Katy Wolstencroft User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Part 1 - An introduction to designing and executing workflows with Taverna. Building a simple workflow.

File type: PowerPoint presentation

Comments: 0 | Viewed: 50 times | Downloaded: 41 times

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Taverna 2
Uploader
3655?size=60x60 Nl Magnus Palmblad

Workflow RTCalc Retention Time Prediction and Outli... (1)

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This workflow takes as input a pepXML file from PeptideProphet, applied RTCalc and outputs a filtered list of peptides based on the retention time Z-scores.

Created: 2014-02-06 | Last updated: 2014-02-06

Credits: User Magnus Palmblad User Sonja Holl

Taverna 2
Uploader
4101?size=60x60 At Artur Kulmukhametov

Workflow PhotoHawk - SSIM (1)

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This workflow provides a comparison result for 2 raw images based on PhotoHawk tool (http://datascience.github.io/photohawk/). The result is measured using SSIM metric (http://purl.org/DP/quality/measures#15).

Created: 2014-02-05

Credits: User Artur Kulmukhametov

Taverna 2
Uploader
4101?size=60x60 At Artur Kulmukhametov

Workflow PhotoHawk - AE (1)

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This workflow provides a comparison result for 2 raw images based on PhotoHawk tool (http://datascience.github.io/photohawk/). The result is measured using AE metric (http://purl.org/DP/quality/measures#4).

Created: 2014-02-05

Credits: User Artur Kulmukhametov

Taverna 2
Uploader
4101?size=60x60 At Artur Kulmukhametov

Workflow PhotoHawk - MAE (1)

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This workflow provides a comparison result for 2 raw images based on PhotoHawk tool (http://datascience.github.io/photohawk/). The result is measured using MAE metric (http://purl.org/DP/quality/measures#5).

Created: 2014-02-05

Credits: User Artur Kulmukhametov

Taverna 2
Uploader
4101?size=60x60 At Artur Kulmukhametov

Workflow PhotoHawk - MSE (1)

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This workflow provides a comparison result for 2 raw images based on PhotoHawk tool (http://datascience.github.io/photohawk/). The result is measured using MSE metric (http://purl.org/DP/quality/measures#6).

Created: 2014-02-05

Credits: User Artur Kulmukhametov

Taverna 2
Uploader
4101?size=60x60 At Artur Kulmukhametov

Workflow PhotoHawk - PAE (1)

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This workflow provides a comparison result for 2 raw images based on PhotoHawk tool (http://datascience.github.io/photohawk/). The result is measured using PAE metric (http://purl.org/DP/quality/measures#7).

Created: 2014-02-05

Credits: User Artur Kulmukhametov

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