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Choose - no title or message parameters (1)

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The split_string_into_string_list_by_regular_expression parses the string 'a,b,c,d,e' and outputs the list ['a','b','c','d','e']. The choose service displays a dialog with no title or message. The user is able to choose from the values ['a','b','c','d',e']. When the user presses OK the value the user chose is passed to the answer port of the choose service and so to the output of the workflow.

Created: 2008-09-27

Credits: Alan Williams

Byte[] to string - empty value (1)

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The beanshell converts the empty string '' to a byte array which is then converted back to the empty string '' by the Byte[]_to_string service.

Created: 2008-09-27

Credits: Alan Williams

Byte[] to string - non empty value (1)

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The beanshell converts the string 'hello' to a byte array which is then converted back to the string 'hello' by the Byte[]_to_string service.

Created: 2008-09-27

Credits: Alan Williams

Ask - title and message parameters (1)

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The ask service displays a prompt with 'Some title' and the prompt message 'Some message'. If the user presses cancel, then a service failure is generated. If the user presses OK then their input, even if it is empty, is passed to the answer port of the ask service and so to the output of the workflow.

Created: 2008-09-27

Credits: Alan Williams

Ask - just message parameter (1)

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The ask service displays a prompt with no title but with the prompt message 'Some message'. If the user presses cancel, then a service failure is generated. If the user presses OK then their input, even if it is empty, is passed to the answer port of the ask service and so to the output of the workflow.

Created: 2008-09-27

Credits: Alan Williams

Ask - just title parameter (1)

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The ask service displays a prompt with the title 'Some title' but no prompt message. If the user presses cancel, then a service failure is generated. If the user presses OK then their input, even if it is empty, is passed to the answer port of the ask service and so to the output of the workflow.

Created: 2008-09-27

Credits: Alan Williams

Ask - no parameters (1)

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The ask service displays a prompt with no title and no prompt message. If the user presses cancel, then a service failure is generated. If the user presses OK then their input, even if it is empty, is passed to the answer port of the ask service and so to the output of the workflow.

Created: 2008-09-27

Credits: Alan Williams

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Example SwissProt Data

Created: 2008-09-25 15:09:03

Credits: Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Plain text

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Example Genbank data

Created: 2008-09-25 15:00:28

Credits: Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Plain text

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Genbank Cross Reference Blocks

Created: 2008-08-18 03:36:47 | Last updated: 2008-08-18 03:41:55

Credits: Jiro

License: Creative Commons Attribution 3.0 Unported License

File type: ZIP archive

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Article List Viewer Blocks

Created: 2008-08-18 03:29:20 | Last updated: 2008-08-18 03:53:39

Credits: Jiro

License: Creative Commons Attribution 3.0 Unported License

File type: ZIP archive

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A Test of myExperiment's file uploading

Created: 2008-08-06 18:22:53

Credits: Yiming Sun

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Plain text

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SaaS Taxonomy

Created: 2008-07-16 03:17:43

Credits: Woloski

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: GIF image

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linking3.xml (1)

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This workflow links between a specified EMBL accesion number to corresponding identifiers in the MEDLINE database.

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

metabolic.xml (1)

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An example of how a more complex workflow can federate multiple resources to perform data mining. In this case a single input data item in the form of a probe set identifier is cross referenced to data sets in multiple locations to answer a kind of 'show me everything about this data' question.

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

gene_ontology_diagram.xml (1)

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This workflow builds up a subgraph of the Gene Ontology (http://www.geneontology.org) to show the context for a supplied term or terms. It shows this context by colouring all ancestors of the term, all children and all siblings. By default, ancestors of the supplied term or terms are coloured orange, siblings purple and direct children teal. Other terms appear in the default wheat colour.

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

BlastComparer.xml (1)

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Perform a blastp search on protein sequence and extract information based on the user input, e.g. a list of GI numbers. N.B. this workflow does not function correctly as it is designed for use with NCBI blast scripts. Some errors may occur. Please use two blast text file inputs for a secure result output.

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

interpro_url.xml (1)

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An example of how a more complex workflow can federate multiple resources to perform data mining. In this case a single input data item in the form of a probe set identifier is cross referenced to data sets in multiple locations to answer a kind of 'show me everything about this data' question.

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: Paul Fisher

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Testing456

Created: 2008-07-12 08:42:06 | Last updated: 2008-07-12 08:43:01

1 item in this pack

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Testing123

Created: 2008-07-12 08:33:53 | Last updated: 2008-07-12 08:44:11

4 items in this pack

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Example of an alternate processor (1)

Trivial workflow which will initially fail, retry twice then fall over to the alternative specified for the FailingThing process.

Created: 2008-05-28

Credits: Jfogel

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sample

Created: 2007-11-15 04:25:53

Credits: Kwon, Jekeun

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Progressive JPEG image

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Meme parser

Created: 2024-12-18 01:11:45 | Last updated: 2025-01-27 08:10:31

Credits: George Kargas

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Trident (Package)

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Batch Predict_Property Analysis for Protein Sequences

Created: 2024-12-17 12:29:43

Credits: George Kargas

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: text/x-python

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Batch Phobius Analysis for Protein Sequences

Created: 2024-12-17 12:26:51

Credits: George Kargas

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: text/x-python

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BLASTP Analysis Pipeline Script

Created: 2024-12-17 12:23:59 | Last updated: 2024-12-17 12:32:28

Credits: George Kargas

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: text/x-python

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Unification of General Relativity and Quantum Mechan...

Created: 2022-02-25 10:37:18

Credits: Surendra Mund

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Adobe PDF

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Antiviral Drugs in the battle against COVID-19 & Min...

Created: 2022-02-02 07:17:26

Credits: Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Adobe PDF

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Mitochondrial genome assembly _V2 (1)

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Created: 2021-12-14 | Last updated: 2021-12-14

Credits: Yash Munnalal Gupta

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webAKT test1

Created: 2021-11-29 16:37:24 | Last updated: 2021-11-29 16:37:42

Credits: Robert Muetzelfeldt

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: JPEG image

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my resume in persian

Created: 2021-09-09 05:32:27 | Last updated: 2021-09-09 05:33:13

Credits: Hamid Raeisi Vanani

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Adobe PDF

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Recetas Saludables (1)

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Diagrama de Flujo de recetas de comidas saludables

Created: 2021-09-06 | Last updated: 2021-09-06

Credits: Karen

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Pathway analysis

Created: 2021-08-20 04:45:34 | Last updated: 2021-08-20 15:07:09

Credits: Z

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: htm

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Formation and Stability of Various Type of Central S...

Created: 2021-08-04 04:16:41

Credits: Surendra Mund

License: Creative Commons Attribution 4.0 International License

File type: Adobe PDF

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Generalization of Different Type of Bodies Exist in ...

Created: 2021-07-26 10:53:39

Credits: Surendra Mund

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Adobe PDF

Comments: 0 | Viewed: 48 times | Downloaded: 7 times

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On the Configuration of EM Waves and Bosons

Created: 2021-07-26 10:51:28

Credits: Surendra Mund

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Adobe PDF

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Cardiac Arrhythmia Market by Segment, Region, End-Us...

Created: 2020-12-23 10:27:18

Credits: Renub Research

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: PowerPoint 2007 presentation

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International Journal of Research Studies in Medical...

Created: 2020-08-21 11:22:57

Credits: Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Adobe PDF

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Antiviral nucleosides- Flu Viruses- QUINOLINES-COV...

Created: 2020-08-21 10:58:20 | Last updated: 2020-08-21 10:58:52

Credits: Drkrishnasarmapathy

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Adobe PDF

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Impact of the water quality of El-Rahawy Drain on so...

Created: 2020-07-22 10:32:45

Credits: anas

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Adobe PDF

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Random Forest based Feature Weightage (1)

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Features can be assigned weightage through the random forest model. In this regard, RapidMiner's Auto Model comes quite handy. Divide the original data into training and testing datasets before applying the workflow to it.  

Created: 2020-06-30 | Last updated: 2020-06-30

Credits: Imran Ali Syed

Gradient Boosting Trees based Feature Weig... (1)

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Features can be assigned weightage through the gradient boosting trees model. In this regard, RapidMiner's Auto Model comes quite handy. Divide the original data into training and testing datasets before applying the workflow to it. 

Created: 2020-06-30 | Last updated: 2020-06-30

Credits: Imran Ali Syed

CHART based Feature Weightage (1)

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Features can be assigned weightage through the decision tree model. In this regard, RapidMiner's Auto Model comes quite handy. Divide the original data into training and testing datasets before applying the workflow to it. 

Created: 2020-06-30 | Last updated: 2020-06-30

Credits: Imran Ali Syed

cutadapt+BWA-MEM-mis1-i2,2-gapex2,2+filter... (1)

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This workflow is designed to genotype trinucleotide repeats from sequencing reads that span the repeat and its flanksDetailed description as follows:1. Input fastq sequencing reads files (Galaxy tool: Input dataset)Input files for the workflow are single-end MiSeq reads (R1 produced using the protocol from Ciosi et al. 2018) or PacBio reads of insert (ROI) in fastq files format.2. Removing Illumina sequencing adaptor sequence in 3’ of the MiSeq reads (Galaxy tool: Cutadapt 1.16)Cutadapt...

Created: 2020-06-01 | Last updated: 2020-06-01

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Complexity Isosteres

Created: 2020-04-27 13:28:21

Credits: Insilicoconsulting

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: text/csv

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Isosteric transform library

Created: 2020-04-27 13:23:39 | Last updated: 2020-04-27 13:29:56

1 item in this pack

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deneme (1)

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Created: 2020-04-27

Credits: mevlüt Aydemir BAIBU

Deriving factual information from WHO COVI... (1)

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 WHO has posted a CSV that's frequently updated with COVID abstracts. A simple PubMed search reveals thousands of abstracts too. So here's an NLP pipeline to mine these and extract meaningful sentences/facts using Stanford Open Information Extractor and Biological entity tagging. #knime #naturallanguageprocessing #textanalytics #textmining #covid19 #nlp #datascience #WHO 

Created: 2020-04-12

Credits: Insilicoconsulting

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Knime Data Table for Antiviral activity multiclass P...

Created: 2020-03-25 06:18:32

Credits: Insilicoconsulting

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Trident (Package)

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Antiviral activity multiclass Predictor (1)

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A simple multi-class antiviral activity predictor based on expanded Pubchem fingerprints and random forest algorithm. Seems to work well to perform quick screens for antiviral molecules.Download training data from CTD (http://ctdbase.org/downloads/) or  use this preprocessed version https://www.myexperiment.org/files/2285.html. Write to me at rajeev.gangal@gmail.com regarding any queries.I make no claim that the predictive model is accurate for clinical hypotheses or that it will find mo...

Created: 2020-03-23 | Last updated: 2020-03-25

Credits: Insilicoconsulting