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GOgetter (no merge) (1)

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Retrieves all GO terms (with experimental evidence) associated with the given genelist. The GO terms are returned in a list per gene.

Created: 2016-06-10

Credits: Davy Cats Tom Rosman

Get from a Pathway the Go fucntion from Kegg (1)

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This workflow gets from a Pathway nr the Go term from the Kegg database and then looks up the go function in the AMIGO database.

Created: 2016-06-10

Credits: Tom Rosman Davy Cats

Attributions: get the function of Go terms.

get the function of Go terms. (1)

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This workflow uses the AMIGO database to get functions descriptions for Go terms.

Created: 2016-06-10

Credits: Tom Rosman Davy Cats

Finding gene difference in pathways betwee... (1)

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Looks up the all the genes in pathways with the Kegg database between to different organismes.

Created: 2016-06-10

Credits: Tom Rosman

pathway difference in ortholog genes (1)

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This workflow looks at a set of human genes and search for the orthologs of mouse and rat. Then it gets for all the genes the pathways linked to it in Kegg and search for difference in them.

Created: 2016-06-10

Credits: Tom Rosman Davy Cats

GOgetter (2)

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Retrieves all GO terms with experimental evidence associated with the given genelist. A GO term may apear multiple times in the resulting list if it is associated with multiple genes.

Created: 2016-06-10 | Last updated: 2016-06-10

Credits: Davy Cats Tom Rosman

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Viewpoint The ENIGMAS Trial – When Should We Treat P...

Created: 2016-05-22 20:00:09

Credits: ALEXANDRU MISCHIE

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Adobe PDF

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Anticoagulation in patients with dilated cardiomyopa...

Created: 2016-05-22 19:59:26

Credits: ALEXANDRU MISCHIE

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Adobe PDF

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Successful management of ostial left main thrombus b...

Created: 2016-05-22 19:58:52

Credits: ALEXANDRU MISCHIE

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Adobe PDF

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Metavisitor: Workflow for Use Case 3-3 (1)

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Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence dataReadthedocMississippi Galaxy server

Created: 2016-05-13 | Last updated: 2016-05-13

Metavisitor: Workflow for remapping in Use... (1)

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Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence dataReadthedocMississippi Galaxy server 

Created: 2016-05-13 | Last updated: 2016-05-13

Metavisitor: Workflow for remapping in Use... (1)

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Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence dataReadthedocMississippi Galaxy server 

Created: 2016-05-13 | Last updated: 2016-05-13

Metavisitor: Workflow for Use Case 1-4 (2)

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Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence dataReadthedocMississippi Galaxy server 

Created: 2016-05-13 | Last updated: 2017-04-17

Metavisitor: Workflow for Use Case 1-3 (2)

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Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence dataReadthedocMississippi Galaxy server 

Created: 2016-05-13 | Last updated: 2017-04-17

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Groundwater Hydrodynamic

Created: 2016-05-10 17:44:09

Credits: Dr Kaveh Ostad Ali Askari

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Adobe PDF

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Author Publications and Citations by Year ... (1)

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This small workflow demonstrates how to connect to and use Europe PMC (http://europepmc.org/RestfulWebService) to count the number of publications and citations per year for one author. Two REST calls are made. First, we "searchPublications" to retrieve the bibliographic records for all published work of a single author. Then, we "getCitations" to extract the year of all articles citing the work of this author. A conditional JSONPath is here used to only look up citing articles for cited work...

Created: 2016-05-09

Credits: Magnus Palmblad

Author Publications and Citations by Year ... (2)

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This small workflow demonstrates how to connect to and use Europe PMC (http://europepmc.org/RestfulWebService) to count the number of publications and citations per year for one author. Two REST calls are made. First, we "searchPublications" to retrieve the bibliographic records for all published work of a single author. Then, we "getCitations" to extract the year of all articles citing the work of this author. A conditional XPath is here used to only look up citing articles for cited work, i...

Created: 2016-05-09 | Last updated: 2016-05-09

Credits: Magnus Palmblad

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Environmental Hydraulics of Open Channel Flows

Created: 2016-05-08 07:16:42

Credits: Dr Kaveh Ostad Ali Askari

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Adobe PDF

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Artificial neural network for modeling nitrate pollu...

Created: 2016-05-08 07:12:52

Credits: Dr Kaveh Ostad Ali Askari

License: Creative Commons Attribution-Share Alike 3.0 Unported License

File type: Adobe PDF

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Phenotypic screening annotation protocols

Created: 2016-05-06 12:02:23 | Last updated: 2016-05-06 12:03:03

3 items in this pack

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Phenotypic screening annotation: protocol 6 (1)

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This workflow contains protocol 6 as published in Digles et al., Open PHACTS Computational Protocols for in silico Target validation of Cellular Phenotypic Screens: Knowing the Knowns, MedChemComm, submitted.This workflow requires the Open PHACTS KNIME nodes (org.openphacts.utils.json_1.1.0.zip) available from https://github.com/openphacts/OPS-Knime and the IUPHAR/BPS Guide to Pharmacology data file available from http://guidetopharmacology.org/DATA/interactions.csv.The workflow returns targe...

Created: 2016-05-06

Credits: Daniela Digles Open PHACTS

Phenotypic screening annotation: protocol 5 (1)

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This workflow contains protocol 5 as published in Digles et al., Open PHACTS Computational Protocols for in silico Target validation of Cellular Phenotypic Screens: Knowing the Knowns, MedChemComm, submitted.This workflow requires the Open PHACTS KNIME nodes (org.openphacts.utils.json_1.1.0.zip) available from https://github.com/openphacts/OPS-Knime.This workflow shows compounds which are found both in an assay of interest (upper part of the workflow) and in kinase assays (lower part of the w...

Created: 2016-05-06

Credits: Daniela Digles Open PHACTS

Phenotypic screening annotation: protocols... (1)

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Created: 2016-05-06 | Last updated: 2016-05-06

Credits: Daniela Digles Open PHACTS

ASTM D2216-10 - Preliminary Workflow (1)

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ASTM D2216-10: Standard Test Methods forLaboratory Determination of Water (Moisture) Content ofSoil and Rock by Mass

Created: 2016-04-25

Credits: Juan Felipe Muñoz Fernández

ASTM D0427-04 - Preliminary Workflow (1)

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ASTM D0427-04: Standard Test Method for Shrinkage Factors of Soils by the Mercury MethodThis a preliminary version of a ASTM D0427 Workflow. This seems like a complex workflow but it does not. A lot of services is because I'm using a basic calculator web service to do simple a math calculations (http://www.dneonline.com/calculator.asmx) This simple web service calc use only two operands to do calc in four basic operations (add, divide, multiply and substract). So it's needed intermedi...

Created: 2016-04-25

Credits: Juan Felipe Muñoz Fernández

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Study of sensitivity of Autumnal wheat to under irri...

Created: 2016-03-23 18:32:52

Credits: Dr Kaveh Ostad Ali Askari

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Optimal design of pressurized irrigation laterals in...

Created: 2016-03-23 18:29:53

Credits: Dr Kaveh Ostad Ali Askari

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Impermanent Changes Investigation of Shape Factors o...

Created: 2016-03-23 18:27:12

Credits: Dr Kaveh Ostad Ali Askari

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Effects of Magnetized Municipal Effluent on Some Che...

Created: 2016-03-23 18:23:16

Credits: Dr Kaveh Ostad Ali Askari

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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The Effect of Heterogeneity Due to Inappropriate Til...

Created: 2016-03-23 18:16:21

Credits: Dr Kaveh Ostad Ali Askari

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Determination of the Nonlinear Muskingum Model Coeff...

Created: 2016-03-23 18:11:07

Credits: Dr Kaveh Ostad Ali Askari

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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ASSESSMENT OF ARTIFICIAL NEURAL NETWORK PERFORMANCE ...

Created: 2016-03-23 15:08:08

Credits: Dr Kaveh Ostad Ali Askari

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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STUDY OF MODIFICATIONS OF THE RIVER PHYSICAL SPECIFI...

Created: 2016-03-23 15:06:23

Credits: Dr Kaveh Ostad Ali Askari

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Developing an Optimal Design Model of Furrow Irrigat...

Created: 2016-03-23 15:04:34

Credits: Dr Kaveh Ostad Ali Askari

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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The Study of Mixture Design for Foam Bitumen and the...

Created: 2016-03-23 15:03:16

Credits: Dr Kaveh Ostad Ali Askari

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Presenting a Mathematical Model for Estimating the D...

Created: 2016-03-23 15:01:17

Credits: Dr Kaveh Ostad Ali Askari

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Usage of Rockfill Dams in the HEC-RAS Software for t...

Created: 2016-03-23 14:59:26

Credits: Dr Kaveh Ostad Ali Askari

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:: Recovery of Run off of the Sewage Refinery, a Fa...

Created: 2016-03-23 14:53:57

Credits: Dr Kaveh Ostad Ali Askari

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Groundwater Hydrodynamics

Created: 2016-03-23 14:48:25

Credits: Dr Kaveh Ostad Ali Askari

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Environmental Hydraulics of Open Channel Flows

Created: 2016-03-23 14:45:13

Credits: Dr Kaveh Ostad Ali Askari

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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:: NUMERICAL METHODS IN GROUNDWATER

Created: 2016-03-23 14:42:54

Credits: Dr Kaveh Ostad Ali Askari

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:: Nitrate Pollution in Groundwater

Created: 2016-03-23 14:39:45 | Last updated: 2016-03-23 14:39:46

Credits: Dr Kaveh Ostad Ali Askari

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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:: CONNECTIONS IN STEEL STRUCTURES

Created: 2016-03-23 14:38:08

Credits: Dr Kaveh Ostad Ali Askari

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Groundwater

Created: 2016-03-23 14:36:17

Credits: Dr Kaveh Ostad Ali Askari

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Modeling of Solute Movement in Groundwater

Created: 2016-03-23 14:34:40

Credits: Dr Kaveh Ostad Ali Askari

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:: Optimization and Its Application in Water Resour...

Created: 2016-03-23 14:31:13

Credits: Dr Kaveh Ostad Ali Askari

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Comportamiento de los metales trazas Cu, P... (1)

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The concentrations of the metalsCu, Pb, Mn and Zn in fra ctions geochemistry insix sediment core of the lagoon Unare, Venezuela.A procedure of sequential extraction of metalswas determined, for each fraction was usedreagents different and conditions of digestionand the concentrations of metals determinedwith spectrophotometer of Atomic Absorption.The fractionating of metals indicated an order ofdecreasing concentration as it follows: residualfraction > organic/sulfur matter > carbonates...

Created: 2016-03-19

Credits: William Senior

Coastal and Marine Water Quality Indicator... (1)

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The Workshop “Coastal and Marine Water Quality Indicators and Methodologies to DeterminePollutant Loads in the Wider Caribbean” took place in Havana, Cuba, with the following objectives:? Analyse methodologies used to determine pollutant loads in the marine environment from pointand non-point sources and the main coastal and marine water quality indicators.? Discuss methodologies used for the characterization and quantification of municipal andindustrial solid wastes.? Present pre...

Created: 2016-03-19

Credits: William Senior

PRINCIPALES FUENTES DE CONTAMINACIÓN DEL R... (1)

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El Manzanares es uno de los principales ríos de Venezuela. Está ubicado en la región nor-oriental del país.

Created: 2016-03-19

Credits: William Senior

PRINCIPALES FUENTES DE CONTAMINACIÓN DEL R... (1)

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El río Manzanares es uno de los más importantes de Venezuela. Está ubicado en la región nor-oriental,en el Estado Sucre. Posee una cota máxima de 2.200,oo msnm, en el Cerro Las Peonias y una mínimade 00,oo msnm en el Golfo de Cariaco, con una longitud de cauce de 81 km, pendiente mínima de 15%y gasto medio de 1,23 m3/s. Existe una precipitación media anual de 1.328,10 mm, con evaporación de1.929,4 mm (MARNR, 1998). Según el...

Created: 2016-03-19

Credits: William Senior