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Taverna 2
Uploader
Avatar Ie Eoincar

Workflow sort_stereo_transient_list_into_cirs_and_c... (1)

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The workflow concept is below. Current workflow is proof of concept and works for default event.1. The initial query is to the stereo_hi_sw_transient list in a particular time range. From this catalogue we extract the longitude of the source of the transient, the longitude error, the start time (launch time of the transient) and the estimated time of arrival. The time of the event is then passed to the HELIO Instrument Location Service (ILS) to extract the Heliocentric Earth Equatorial longit...

Created: 2014-08-11

Credits: User Eoincar

Creator
Avatar Rekha Maryanne Louis
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Pack usability test pack4


Created: 2014-08-07 10:43:42

for myExperiment usability testing exercise

0 items in this pack

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3899?size=60x60 Se Sarah Bourlat
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Blob usability test file Sarah

Created: 2014-08-07 09:51:23 | Last updated: 2014-08-07 09:53:17

Credits: User Sarah Bourlat User Rekha Maryanne Louis

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

usability trial

File type: PowerPoint 2007 presentation

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4196?size=60x60 Biodiversity eLaboratory
Project Biovel
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Blob Alexandrium minutum potential distribution in the Ba...

Created: 2014-08-04 15:24:08 | Last updated: 2015-02-16 11:52:32

Credits: User Biomobst User Sarah Bourlat

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The potential distribution  of Alexandrium minutum in the Baltic Sea

File type: PNG image

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4196?size=60x60 Biodiversity eLaboratory
Project Biovel
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Blob Alexandrium minutum potential distribution

Created: 2014-08-04 15:21:24 | Last updated: 2015-02-16 11:53:00

Credits: User Biomobst User Sarah Bourlat

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The potential distribution of Alexandrium minutum

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4196?size=60x60 Biodiversity eLaboratory
Project Biovel
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Pack Application of Ecological Niche Modelling and Earth ...


Created: 2014-08-04 14:18:00 | Last updated: 2014-08-04 15:44:20

This pack contains some of the data, workflows and results that are described in the "MarCoast II - Marine and Coastal Environmental Information Services Ballast Water Option" report by:Kerstin Stelzer (Brockmann Consult GmbH)Karin HeyerDr. Sarah Bourlat (SeAnalytics AB)Dr. Matthias Obst (SeAnalytics AB)ScopeThis report describes the work that has been performed in the Ballast Water Option in the framework of the ESA GSE project Marcoast-2. The Option was dedicated to...

19 items in this pack

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4196?size=60x60 Biodiversity eLaboratory
Project Biovel
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Blob Fucus vesiculosus current and 2050 difference

Created: 2014-08-04 11:35:16

Credits: User Sonja Leidenberger

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This PNG gives a low resolution image for the difference between the current and predicted 2050 niches for Fucus vesiculosus

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4196?size=60x60 Biodiversity eLaboratory
Project Biovel
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Blob Fucus vesiculosus 2050 distribution

Created: 2014-08-04 11:33:48 | Last updated: 2014-08-04 13:04:48

Credits: User Sonja Leidenberger

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This PNG gives a low resolution image of the niche predicted for Fucus vesiculosus in 2050

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4196?size=60x60 Biodiversity eLaboratory
Project Biovel
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Blob Fucus vesiculosus current distribution

Created: 2014-08-04 11:31:25 | Last updated: 2015-02-16 10:07:57

Credits: User Sonja Leidenberger

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This PNG gives a low-resolution picture of the predicted current niche of Fucus vesilosus

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4196?size=60x60 Biodiversity eLaboratory
Project Biovel
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Blob Fucus vesiculosus occurrences from GBIF

Created: 2014-08-04 11:24:58

Credits: User Sonja Leidenberger

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This spreadsheet indicates the source of occurrences of Fucus vesiculosus retrieved from GBIF.

File type: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet

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4196?size=60x60 Biodiversity eLaboratory
Project Biovel
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Pack Mapping present and future predicted distribution pa...


Created: 2014-08-04 09:48:54 | Last updated: 2014-08-05 10:28:43

This pack gathers together some of the data, results and workflows used in the "Mapping present and future predicted distribution patterns for a meso-grazer guild in the Baltic Sea" study byLeidenberger, Sonja; University of Gothenburg, Department of Biology and Environmental Sciences - KristinebergDe Giovanni, Renato; Centro de Referência em Informação Ambiental, Centro de Referência em InformaçãoKulawik, Robert; Fraunhofer IAI...

17 items in this pack

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Pack Mean matrix pack


Created: 2014-07-31 13:34:16 | Last updated: 2014-08-14 17:52:30

This pack contains a workflow, a file and documentation (tutorial to run the workflow).This mean matrix workflow estimates the mean matrix from a list of matrices.

8 items in this pack

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Pack Calculate quasi-extinction threshold pack


Created: 2014-07-30 14:00:20 | Last updated: 2014-08-14 12:05:20

This pack contains a workflow, a file and documentation (tutorial to run the workflow).This workflow estimates by simulation the quasi-extinction probability time cumulative distribution function for a structured population in an independently and identically distributed (iid) stochastic environment. This workflow is based on the popbio package (stoch.quasi.ext - Calculate quasi-extinction threshold, Stubben, Milligan and Nantel, 2013) based on the The MATLAB code in Box 7.5 (Morris and Doak ...

8 items in this pack

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Simulate stochastic growth from a sequence of matric...

Created: 2014-07-30 13:47:47

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Francisco Quevedo User Mikolaj Krzyzanowski User Gerard Oostermeijer

Attributions: Workflow Simulate stochastic growth from a sequence of matrices

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This documentation (tutorial to run the workflow) explains how to run a workflow that belongs to the pack with same name.The Simulate stochastic growth from a sequence of matrices Workflow provides an environment to simulate stochastic growth by projection using whole matrix selection techniques in an independently and identically distributed (iid) environment from a set of 2 or more projection matrices.Outputs:Equal selection dataStochastic projectionUnequal selection dataTo know more detail...

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Taverna 2
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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Simulate stochastic growth from a sequence... (1)

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The Simulate stochastic growth from a sequence of matrices Workflow provides an environment to simulate stochastic growth by projection using whole matrix selection techniques in an independently and identically distributed (iid) environment from a set of 2 or more projection matrices. This workflow is based on the popbio package (script: stoch.projection - Simulate stochastic growth from a sequence of matrices, Stubben, Milligan and Nantel, 2013) based on the The MATLAB code in Box 7.3 (Mo...

Created: 2014-07-30 | Last updated: 2014-08-14

Credits: User Maria Paula Balcazar-Vargas User Mikolaj Krzyzanowski User Jon Giddy User Francisco Quevedo User Gerard Oostermeijer

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Stage vectors, Survival and Growth rate curves (demo...

Created: 2014-07-25 12:41:06

Credits: User Maria Paula Balcazar-Vargas User Gerard Oostermeijer

Attributions: Workflow Stages vectors plots, Survival and Growth rate curves

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This documentation (tutorial to run the workflow) explains how to run a workflow that belongs to the pack with same name.The Stages vectors plots, Survival and Growth rate curves Workflow provides an environment to perform several analyses on a series of stage-matrices:Population projectionSurvival values calculations per stage per year and its respective plot;Growth rates (lambda) calculations per year and its respective plot;Stage Vectors calculations and their respective plots.

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Transient dynamics documentation

Created: 2014-07-25 12:16:46

Credits: User Maria Paula Balcazar-Vargas User Gerard Oostermeijer

Attributions: Workflow Transient Dynamics.

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This documentation (tutorial to run the workflow) explains how to run a workflow that belongs to the pack with same name.The Transient dynamics or Calculate population growth rates by projection Workflow provides an environment to calculates the population growth rate and stable stage distribution by repeated projections of the equation n(t+1)=An(t) and to produce plots of the short-term dynamics and convergence to stable stage distribution using stage vector projections.Transient dynamic ana...

File type: Adobe PDF

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Net reproductive rate (Ro) documentation

Created: 2014-07-25 11:25:19

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Net reproductive rate (Ro)

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This documentation (tutorial to run the workflow) explains how to run a workflow that belongs to the pack with same name.The Net reproductive rate (Ro) Workflow provides an environment to calculate the net reproductive rate (Ro). Ro is the mean number of offspring by which a new-born individual will be replaced by the end of its life, and thus the rate by which the population increases from one generation to the next.

File type: Adobe PDF

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Generation Time (T) documentation

Created: 2014-07-25 11:22:18

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Generation time (T)

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This documentation (tutorial to run the workflow) explains how to run a workflow that belongs to the pack with same name.The Generation Time (T) Workflow provides an environment to calculate the generation time. The generation time is the time T required for the population to increase by a factor of Ro (net reproductive rate). In other words, T calculates how much time takes to a plant/animal to replace itself by a factor of Ro.

File type: Adobe PDF

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Eigen analysis documentation

Created: 2014-07-25 11:18:44

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Eigen analysis

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This documentation (tutorial to run the workflow) explains how to run a workflow that belongs to the pack with same name.The Eigen analysis workflow provides an environment for the analysis of a stage-matrix and perform several analyses on it.The Eigen analysis results are a set of demographic statistics:Lambda or dominant eigenvalue (λ).The stable stage distribution (w).The sensitivity matrixThe Elasticity matrix.Reproductive value (v).The damping ratio (ρ)

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Damping ratio documentation

Created: 2014-07-25 11:07:01

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Damping ratio

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This documentation (tutorial to run the workflow) explains how to run a workflow that belongs to the pack with same name.The Damping ratio Workflow provides an environment to calculate the damping ratio of several matrices and plot them.The damping ratio can be considered as a measure of the intrinsic resilience of the population, describing how quickly transient dynamics decay following disturbance or perturbation regardless of population structure, the larger the p, the quicker the populati...

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Matrix population models construction documentation

Created: 2014-07-25 11:02:01

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Creation of a stage matrix model from demographic monitoring of individuals in an animal or plant population

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This documentation (tutorial to run a workflow) explains how to run a workflow that beolngs to the pack with the same name.The Creation of a stage matrix model Workflow provides an environment to construct a stage matrix model. This workflow create a stage matrix based on two years census data that contains transitions probabilities from each stage to the next, of tagged or mapped individuals of an animal or plant population. The resulting is a stage matrix model.

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Matrix Population Models analysis documentation

Created: 2014-07-25 10:55:42

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Matrix Population Model analysis v12

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This documentation (tutorial to run the workflow) explains how to run a workflow that belongs to the pack with same name.The Matrix Population Models analysis Workflow provides an environment to perform several analyses on a stage-matrix with no density dependence.Analyses:Eigen analysis.Age specific survival.Generation time (T).Net reproductive rate (Ro).Transient Dynamics.Resample a projection matrix (Confidence intervals of λ).Survival curveKeyfitz’s ΔCohen’s cumul...

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Matrix Population Models construction and analyses d...

Created: 2014-07-25 10:48:13 | Last updated: 2014-07-25 10:50:17

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Matrix Population Model construction and analysis v20

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This documentation (tutorial to run the workflow) explains how to run a workflow that belongs to the pack with same name.The Matrix Population Models construction and analyses Workflow provides an environment for create a stage-matrix with no density dependence and perform several analyses on it.Analyses:Eigen analysis.Age specific survival.Generation time (T).Net reproductive rate (Ro).Transient Dynamics.Bootstrap of observed census transitions (Confidence intervals of λ).Survival cur...

File type: Adobe PDF

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Bootstrap of observed census transitions documentation

Created: 2014-07-25 10:37:03

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This documentation (tutorial to run the workflow) explains how to run a workflow that belongs to the pack with same name.The Bootstrap of observed census transitions (confidence intervals of λ) workflow for local execution calculates bootstrap distributions of population growth rates (λ), stage vectors, and projection matrix elements by randomly sampling with replacement from a stage-fate data frame of observed transitions. The goal of a demographic analysis is very often to est...

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Parametric Bootstrap or Resample a projection matrix...

Created: 2014-07-25 09:41:10

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Parametric Bootstrap or Resample a projection matrix Workflow

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This documentation (tutorial to run the workflow) explains how to run a workflow that belongs to the pack with same name.The Parametric Bootstrap or Resample a projection matrix Workflow provides an environment to resample a projection matrix using a multinomial distribution for transitions and a log normal distribution for fertilities (Stubben, Milligan, and Nantel. 2011). The resample is based on number of plants surveyed. The projection matrix A is first split into separate transition and ...

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Age-specific survival documentation

Created: 2014-07-24 11:48:40

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Age specific analysis

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This documentation (tutorial to run the workflow) explains how to run a workflow that belongs to the pack with the same name.The age-specific survival analysis workflow gives the basic information of the mean, variance and coefficient of variation (CV) of the time spent in each stage class and the mean and variance of the time of death.AnalysesFundamental matrix (N)Variance(var)Coefficient of variation (CV)MeanetaVareta

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Keyfitz’s delta documentation

Created: 2014-07-24 08:25:05

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Keyfitz delta

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is documentation (tutorial to run the workflow) explains how to run a workflow that belongs to the pack with the same name.The Keyfitz’s delta Workflow provides an environment to calculate the Keyfitz delta value. Keyfitz’s delta is a measure of the distance between any two probability vectors (Keyfitz 1968). In this case is a measure of the distance between n (Observed Stage Distribution) and w (Stable Stage Distribution). The maximum value is 1 and the minimum value is 0 (w...

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Cohen’s cumulative distance documentation

Created: 2014-07-24 08:20:42

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Cohen’s cumulative distance

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This documentation (tutorial to run the workflow) explains how to run a workflow that belongs to the pack with same name.The Cohen’s cumulative distance Workflow provides an environment to calculate the Cohen’s cumulative distance. The Cohen’s cumulative distance measures the difference between observed and expected vectors along the matrix path that the population would take to reach the expected population vector. It is a function of both the observed stage distribution (n...

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Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Cohen’s cumulative distance (1)

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The Cohen’s cumulative distance Workflow provides an environment to calculate the Cohen’s cumulative distance. The Cohen’s cumulative distance measures the difference between observed and expected vectors along the matrix path that the population would take to reach the expected population vector. It is a function of both the observed stage distribution (n0) and the structure of the matrix (A) (Williams et al 2011). Cohen’s cumulative distance will not work for reducible matrices or imprimiti...

Created: 2014-07-23

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Matrix Population Model analysis v12 Workflow Matrix Population Model construction and analysis v20

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Pack Cohen cumulative distance pack


Created: 2014-07-23 13:43:22 | Last updated: 2014-07-24 08:21:00

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Cohen’s cumulative distance Workflow provides an environment to calculate the Cohen’s cumulative distance. The Cohen’s cumulative distance measures the difference between observed and expected vectors along the matrix path that the population would take to reach the expected population vector. It is a function of both the observed stage distribution (n0) and the structure of the matrix...

3 items in this pack

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Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Keyfitz delta (1)

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The Keyfit delta Workflow provides an environment to calculate the Keyfit delta value. Keyfitz’s delta is a measure of the distance between any two probability vectors (Keyfitz 1968). In this case is a measure of the distance between n (Observed Stage Distribution) and w (Stable Stage Distribution). The maximum value is 1 and the minimum value is 0 (when the vectors are identical). ============================================================ This workflow has been created by the Biodiversit...

Created: 2014-07-23

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Matrix Population Model analysis v12 Workflow Matrix Population Model construction and analysis v20

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Pack Keyfitz's delta pack


Created: 2014-07-23 11:19:37 | Last updated: 2014-07-24 08:25:22

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Keyfit delta Workflow provides an environment to calculate the Keyfit delta value. Keyfitz’s delta is a measure of the distance between any two probability vectors (Keyfitz 1968). In this case is a measure of the distance between n (Observed Stage Distribution) and w (Stable Stage Distribution). The maximum value is 1 and the minimum value is 0 (when the vectors are identical).

3 items in this pack

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1217?size=60x60 Gb Alan Williams
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Blob XPath tutorial presentation

Created: 2014-07-16 12:16:48

Credits: User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a tutorial introducing how to use Taverna's XPath capabilities

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1217?size=60x60 Gb Alan Williams
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Blob Taverna Workbench introduction presentation

Created: 2014-07-16 12:15:19

Credits: User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a tutorial designed to introduce the basic features of Taverna Workbench

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1217?size=60x60 Gb Alan Williams
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Blob Help presentation

Created: 2014-07-16 12:13:54

Credits: User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a presentation of information on where to find help on myGrid tools

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1217?size=60x60 Gb Alan Williams
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Blob Introduction to using components presentation

Created: 2014-07-16 12:12:13

Credits: User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a quick tutorial on how to use components within a workflow

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1217?size=60x60 Gb Alan Williams
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Blob Advanced Taverna Features Presentation

Created: 2014-07-16 12:09:47 | Last updated: 2014-07-16 12:10:55

Credits: User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a tutorial on some of Taverna's advanced features.

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4011?size=60x60 Gb Alex Nenadic
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Blob myGrid Tools for Scientists Presentation

Created: 2014-07-16 12:03:42 | Last updated: 2014-07-18 14:43:15

Credits: User Alex Nenadic

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Introduction to myGrid tools for scientists

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Taverna 2
Uploader
1217?size=60x60 Gb Alan Williams

Workflow EBI_InterproScan (1)

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Perform EBI Interproscan

Created: 2014-07-16 | Last updated: 2014-07-16

Taverna 2
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1217?size=60x60 Gb Alan Williams

Workflow Experiments for gene (2)

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This workflow uses the Allen Brain REST API to fetch the experiements corresponding to a named gene

Created: 2014-07-15 | Last updated: 2014-07-15

Credits: User Alan Williams

Taverna 2
Uploader
1217?size=60x60 Gb Alan Williams

Workflow Download images for gene (3)

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This workflow downloads the first few images corresponding to experiments for the specified gene

Created: 2014-07-13 | Last updated: 2014-07-15

Credits: User Alan Williams

Creator
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Pack Simulate stochastic growth from a sequence of matric...


Created: 2014-07-10 12:05:44 | Last updated: 2014-07-30 13:48:06

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Simulate stochastic growth from a sequence of matrices Workflow provides an environment to simulate stochastic growth by projection using whole matrix selection techniques in an independently and identically distributed (iid) environment from a set of 2 or more projection matrices.Outputs:Equal selection dataStochastic projectionUnequal selection dataTo know more details about the analysis, Morris and D...

8 items in this pack

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1405?size=60x60 At Sven
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Pack ARC to WARC migration with quality assurance scripts


Created: 2014-07-10 08:39:49

These are the tool service scripts used in Taverna workflow available on myExperiment (http://www.myexperiment.org/workflows/4333). The Taverna workflow is configured by adapting the values of the constant values (light-blue boxes) which define the paths to configuration files, deployment files, and scripts in the processing environment. However, as Taverna is just used as an orchestration tool to build a sequence of bash script invocations, it is also possible to just use the individual scri...

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Taverna 2
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1405?size=60x60 At Sven

Workflow ARC to WARC Migration with CDX Index and w... (1)

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Workflow for migrating ARC to WARC and comparing the CDX index files (Linux). The workflow has an input port “input_directory” which is a local path to the directory containing the ARC files, and an input port “output_directory” which is the directory where the workflow outputs are created. The files in the input directory are migrated using the “arc2warc_migration_cli” tool service component to perform the migration. The “cdx_creator_arc” and “cdx_creator_warc” tool service components creat...

Created: 2014-07-09

Credits: User Sven

Taverna 2
Uploader
1217?size=60x60 Gb Alan Williams

Workflow Demonstration of configurable iteration (1)

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This workflow shows the use of the iteration strategy editor to ensure that only relevant combinations of inputs are used during an implicit iteration.

Created: 2014-07-09

Credits: User Alan Williams

Attributions: Workflow Demonstration of configurable iteration

Taverna 2
Uploader
1217?size=60x60 Gb Alan Williams

Workflow EBI_InterproScan_broken (1)

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This workflow performs an interproscan at the EBI on sequences provided as input. The output is provided as text and xml. This workflow uses the new EBI services, which are asynchronous and require looping over the nested workflow (Status) until the workflow has finished. Many of the EBI services now work in this way, so you can use this workflow as an example of the invocation pattern and looping configuration. Note that this workflow is deliberately broken

Created: 2014-07-09

Credits: User Alan Williams User Katy Wolstencroft User Hamish McWilliam

Attributions: Workflow EBI_InterproScan_NewServices

Creator
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Pack Parametric Bootstrap or Resample a projection matrix...


Created: 2014-07-09 14:03:43 | Last updated: 2014-07-25 09:41:32

This pack contains a workflow, a file and documentation (tutorial to run the workflow). The Parametric Bootstrap or Resample a projection matrix Workflow provides an environment to resample a projection matrix using a multinomial distribution for transitions and a log normal distribution for fertilities (Stubben, Milligan, and Nantel. 2011). The resample is based on number of plants surveyed. The projection matrix A is first split into separate transition and fertility matrices. Dead fates ar...

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Pack Bootstrap of observed census transitions pack


Created: 2014-07-09 12:56:51 | Last updated: 2014-07-25 10:37:19

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Bootstrap of observed census transitions (confidence intervals of λ) workflow for local execution calculates bootstrap distributions of population growth rates (λ), stage vectors, and projection matrix elements by randomly sampling with replacement from a stage-fate data frame of observed transitions. The goal of a demographic analysis is very often to estimate lambda, because lambda is es...

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4011?size=60x60 Gb Alex Nenadic
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Pack Taverna - VPH-Share workshop 17-18 July 2014


Created: 2014-07-09 11:36:13 | Last updated: 2014-08-13 14:37:51

Taverna - VPH-Share workshop 17-18 July 2014Location: The Pam Liversidge Building, Sir Frederick Mappin Building – Sheffield S1 3JD, UKRegistration link: http://bit.ly/vph-share-trainingFormat: The workshop is a two-day hands-on training event about workflows in the biomedical arena, with a focus on VPH-Share and Taverna.Target community & qualifications: The target community is developers and research scientists working in all areas of biomedical/healthcare research within the...

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