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Jreeves

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A Test File

Created: 2012-07-10 23:30:05

Credits: Jreeves

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Testing

File type: Plain text

Comments: 0 | Viewed: 17 times | Downloaded: 7 times

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Khalid Belhajjame

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Janus Provenance trace of a Gene_To_Pathway Taverna ...

Created: 2012-07-10 08:13:07

Credits: Khalid Belhajjame

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is the Janus provenance traces produced by the Taverna workflow in http://www.myexperiment.org/workflows/3001.html?version=1

File type: RDF data

Comments: 0 | Viewed: 39 times | Downloaded: 17 times

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Uploader

Khalid Belhajjame

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OPM Provenance trace of a Gene_To_Pathway Taverna wo...

Created: 2012-07-10 08:11:43

Credits: Khalid Belhajjame

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The following file is the OPM provenance produced by the execution of the workflow in http://www.myexperiment.org/workflows/3001.html?version=1

File type: RDF data

Comments: 0 | Viewed: 33 times | Downloaded: 20 times

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Uploader

Khalid Belhajjame

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Log file of the execution of a Vistrails workflow

Created: 2012-07-10 08:08:14

Credits: Khalid Belhajjame

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is the log file obtained by executing the Vistrails workflow in http://www.myexperiment.org/workflows/3003.html?version=1

File type: XML

Comments: 0 | Viewed: 31 times | Downloaded: 16 times

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Vistrails

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Khalid Belhajjame

Gene to Pathways (Vistrails) (1)

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This is a Vistrails workflow that returns the pathways of a given gene ID. In doing so, it uses two kegg services.

Created: 2012-07-10

Credits: Khalid Belhajjame

Taverna 2

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Khalid Belhajjame

Gene to Pathways (1)

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This is a Taverna workflow that given a gene ID fetches the corespondondings pathways. To do so, the workflow make use of two KEGG web services.

Created: 2012-07-09 | Last updated: 2012-07-10

Credits: Khalid Belhajjame

Creator

Khalid Belhajjame

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Gene_To_Pathway using Taverna and Vistrails

Created: 2012-07-09 18:17:35 | Last updated: 2012-07-10 08:15:19

This pack contains a workflow that use Kegg web service to fetch the pathways that corresponds to a given gene id. The pack contains two versions of the workflow, one using the Taverna workbench and the second was designed using the Vistrails workflow system. As well as the workflows specifications, the pack contains the log of execution (in XML) of the Vistrails workflow and the provenance traces (in RDF) of the Taverna execution using the OPM and Janus formats.

5 items in this pack

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Taverna 2

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Kristina Hettne

List Concept Sets (3)

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Pupose: The workflow returns a list of all Concept Set IDs currently available in the database. The Concept Sets have an hierarchical structure that can be inferred by referring to the parent Concept Set ID.