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Presentation - Social Machines - Three Shifts in Dig...

Created: 2012-06-28 08:45:11 | Last updated: 2012-06-28 09:00:27

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SNP_ID2EntrezGene_ID (4)

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Purpose: The workflow maps a SNP (dbSNP id) to a gene (EntrezGene id). Author comments: The window for gene inclusion can be set using the set_width parameter. This workflow can be used together with other workflows in this pack: http://www.myexperiment.org/packs/282 for functional gene and SNP annotation and knowledge discovery.

Created: 2012-06-26 | Last updated: 2013-03-11

Credits: Kristina Hettne Harish Dharuri

Online update recommendation web service V2 (1)

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 After some arbitrary number of recommendations to specific users, system has to update recommendations in item recommendation table. This is accomplished by calling the online update recommendation web service, which updates the recommendation model in RapidAnalytics repository and updates the recommendations for specific users in item recommendation table.

Created: 2012-06-20 | Last updated: 2012-06-20

Offline update recommendation web service V2 (1)

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  Periodically we have to do a full re-training on whole train set by the offline update recommendation web service.

Created: 2012-06-20 | Last updated: 2012-06-20

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Presentation - Reconstructable Research

Created: 2012-06-18 15:03:43 | Last updated: 2012-06-18 15:09:54

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Sample Dataset

Created: 2012-06-17 14:45:21

Credits: Eoghan Barry

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

File type: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet

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Presentation - The Reality of Reproducibility of in ...

Created: 2012-06-16 13:34:35 | Last updated: 2012-06-28 09:43:48

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Gene enhancer region analysis (1)

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 This Galaxy pipeline searches for transciption factor binding sites which are conserved through to Fugu. It then finds genes associated with these enhancer binding sites. See http://screencast.g2.bx.psu.edu/MAF_manipulation for the screencast that describes how this workflow is developed.

Created: 2012-06-14 | Last updated: 2012-07-06

Advanced FastQ manipulation (1)

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 This Galaxy workflow performs advanced FastQ manipulation as demonstrated by the screencast at http://screencast.g2.bx.psu.edu/quickie_14_fastq_adv/flow.html. Given a FastQ set of data, it will be transformed using the tools, Groomer, Filter FastQ, FastQ Trimmer, Manipulate FastQ before it is finally converted into FASTA format.

Created: 2012-06-14 | Last updated: 2012-06-14

Perform QC on FastQ data (1)

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 This Galaxy pipeline performs quality control analyses on FastQ data. A report is generated which provides various measures of the quality of the sequence reads.

Created: 2012-06-14 | Last updated: 2012-06-14