User: Norman Morrison

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Name: Norman Morrison

Joined: Thursday 24 November 2011 12:52:49 (UTC)

Last seen: Thursday 24 April 2014 13:12:39 (UTC)

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Location: Manchester, United Kingdom

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An introduction to designing and executing workflows...

Created: 2014-02-13 08:46:17

Credits: Norman Morrison Katy Wolstencroft Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This tutorial uses Bioinformatics exercises as an introduction to designing and executing workflows with Taverna.

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An introduction to Taverna components

Created: 2014-02-11 16:15:52 | Last updated: 2014-02-11 16:27:15

Credits: Norman Morrison Alan Williams Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Working with the BioVeL Portal

Created: 2014-02-11 16:12:36

Credits: Norman Morrison Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

In this exercise we will upload and run a simple workflow that we created in the previous exercises on the BioVeL portal.

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Setup instructions for BioLinux VM

Created: 2014-02-11 16:01:51 | Last updated: 2014-02-13 11:06:17

Credits: Norman Morrison quevedo79

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Version2

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Introduction and learning objectives

Created: 2014-02-11 15:52:31

Credits: Norman Morrison

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Embedding an R Script in a Workflow Exercise

Created: 2014-02-11 15:42:26

Credits: Norman Morrison

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This exercise is designed as a problem based learning task to understand how to embed R Scripts in workflows in Taverna.

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Using R Shell in Taverna workbench

Created: 2014-02-11 14:55:12 | Last updated: 2014-02-13 17:54:04

Credits: Norman Morrison Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

In this tutorial we wil perform some simple statistical analyses using the RShell processor

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Exploring the Taverna workflow engine

Created: 2014-02-10 14:45:48 | Last updated: 2014-02-10 14:46:54

Credits: Norman Morrison Katy Wolstencroft Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

In this tutorial we will explore the Taverna workflow engine, including: 1) iteration; 2) looping; 3) parallel invocation.

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An introduction to designing and executing workflows...

Created: 2014-02-06 16:42:14 | Last updated: 2014-02-06 16:44:14

Credits: Norman Morrison Katy Wolstencroft Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Part 2 - An introduction to designing and executing workflows with Taverna. Importing and exporting data.

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03E_species_list_2.xls

Created: 2014-02-06 16:09:11

Credits: Norman Morrison

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This data file is supplementary material for "An Introduction to Designing and Executing Workflows with Taverna - Part 2".

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03D_species_2.txt

Created: 2014-02-06 16:08:26

Credits: Norman Morrison

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This data file is supplementary material for "An Introduction to Designing and Executing Workflows with Taverna - Part 2".

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03C_species_list_1.xls

Created: 2014-02-06 16:02:27

Credits: Norman Morrison

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This data file is supplementary material for "An Introduction to Designing and Executing Workflows with Taverna - Part 2".

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03B_species_1.txt

Created: 2014-02-06 15:19:41 | Last updated: 2014-02-06 16:03:18

Credits: Norman Morrison

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This data file is supplementary material for "An Introduction to Designing and Executing Workflows with Taverna - Part 2".

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An introduction to designing and executing workflows...

Created: 2014-02-06 14:52:19 | Last updated: 2014-02-06 16:45:12

Credits: Norman Morrison Katy Wolstencroft Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Part 1 - An introduction to designing and executing workflows with Taverna. Building a simple workflow.

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Introduction to myExperiment

Created: 2014-02-06 14:46:10

Credits: Norman Morrison Katy Wolstencroft Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Biodiversity Test Data for Rservice Tutorial

Created: 2013-12-04 22:27:38 | Last updated: 2013-12-04 22:29:48

Credits: Norman Morrison

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A small hypothetical set of species incidence data from 4 species measured from 6 sites, for use with the "Performing statistical analyses using the Rshell processor " tutorial.

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R Exercise Worm Gen Matrix Data

Created: 2013-12-03 22:27:23

Credits: Norman Morrison Daniel Pass

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Data provided by Daniel Pass, Cardiff University

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R Exercise Site Info Data

Created: 2013-12-03 22:25:21 | Last updated: 2013-12-03 22:26:11

Credits: Daniel Pass

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Data provided by Daniel Pass, Cardiff University

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R Exercise NMDS R Script

Created: 2013-12-03 22:21:30

Credits: Norman Morrison Daniel Pass

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This R Script was authored by Daniel Pass, Cardiff University, UK3rd December 2013

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Biodiversity Test Data for Rservice Tutorial

Created: 2013-12-02 22:01:02

Credits: Norman Morrison

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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