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Type: Excel workbook
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Project Biovel

Blob Demographic data Cryptantha flava

Created: 2013-08-13 10:13:10 | Last updated: 2014-07-04 12:30:08

Credits: User Robcito

Attributions: Workflow Integral Projection Model for Demographic Modelling v34

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a .csv file of one year demographic data of the species: Cryptantha flava, collected and published by Roberto Salguero-Gómez (University of Queensland).This file allow users to run Integral Projection Model workflow. http://www.myexperiment.org/workflows/3687.html Each row represents one observation of an organism in the population at one census time t with the following column names:size: size of individuals in census time tsizeNext: size of individual...

File type: Excel workbook

Comments: 0 | Viewed: 53 times | Downloaded: 46 times

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Blob Gene Cosine Scores

Created: 2009-08-10 16:00:45

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This excel file contains a list of genes linked to the resistance to African trypanosomiasis in the mouse. Genes from the Tir1 QTL were used in a search through PubMed. The results were then correlated to the trypanosomiasis resistance phenotype. The higher the score (and ranking) the more related to the phenotype the gene is likely to be. This is based on the co-occurrence of terms within the gene and phentoype corpora.

File type: Excel workbook

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Blob Pathway Cosine Scores from Day7 and Tir1 QTL

Created: 2009-08-10 15:55:24

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This excel file contains a list of all pathways found to be differentially expressed at day 7 post infection in the trypanosomiasis resistance phenotype, which contain genes in the Tir1 QTL. The pathways in this file have been ranked according to the scores obtained after calculating a cosine vector value against the trypanosomiasis resistance phenotype. The higher the score, the more closely linked to a phentype a given pathway is. This allows each pathway to be ranked giving biologists a ...

File type: Excel workbook

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Blob Tir1 QTL - microarray day 7 intersecting pathways

Created: 2009-04-08 17:57:57

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This spreadhseet contains all of the intersecting pathways between the Tir1 QTL and day 7 differentially expressed genes

File type: Excel workbook

Comments: 0 | Viewed: 54 times | Downloaded: 43 times

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Blob Tir1 QTL - Day 3 Microarray intersecting pathways

Created: 2009-04-08 17:56:10

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This spreadhseet contains all of the intersecting pathways between the Tir1 QTL and day 3 differentially expressed genes

File type: Excel workbook

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Blob Re-sequenced Daxx gene info

Created: 2009-04-08 17:53:46 | Last updated: 2009-08-10 12:30:59

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This spreadsheet contains information about the re-sequencing of the daxx gene, identified as a candidate QTg for the African Trypanosomiasis resiatance phenotype. This file is related to the paper: http://www.ncbi.nlm.nih.gov/pubmed/17709344

File type: Excel workbook

Comments: 0 | Viewed: 57 times | Downloaded: 38 times

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Blob Authors table

Created: 2009-04-08 13:36:10 | Last updated: 2009-08-10 12:37:37

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This table contains a list of articles used to construct a list of issues with regards to the lack of systematic and explicit data analyses conducted in bioinformatcis. Each author list is linked directly to their publication within PubMed.

File type: Excel workbook

Comments: 0 | Viewed: 37 times | Downloaded: 24 times

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Blob CA24 assessments

Created: 2008-10-09 14:29:36 | Last updated: 2008-10-09 14:30:30

Credits: User Antoon Goderis

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Excel file with assessments made by 24 participants as part of CA24. See exercise materials to understand the columns or contact goderisa@cs.man.ac.uk.

File type: Excel workbook

Comments: 0 | Viewed: 49 times | Downloaded: 32 times

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Blob Supplementary file 3: Gene prioritization

Created: 2016-10-25 15:04:40

Credits: User Eleni

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Top 100 novel proteins, resulted from the semantic analysis associated with HTT and epigenetics

File type: Excel workbook

Comments: 0 | Viewed: 15 times | Downloaded: 3 times

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Blob Long list of stopwords

Created: 2015-12-07 14:46:51

Credits: User Magnus Palmblad

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a longer list of unspecific stopwords frequently appearing in scientific abstracts. This is an extended version of the "Long Stopword List" on the Ranks NL Website (http://www.ranks.nl/stopwords). 

File type: Excel workbook

Comments: 0 | Viewed: 51 times | Downloaded: 11 times

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