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Paul Fisher

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Phenotype Term Counts (in Phenotype Corpus)

Created: 2009-08-11 13:34:42 | Last updated: 2009-08-11 13:58:28

Credits: Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains a count of each phenotype term extracted from corpus of phenotype abstracts. Each value represents the number of articles in the phenotype corpus the term appears. The use of this file is to calculate a cosine vector score for correlating a given concept (e.g. pathway or gene) with a phenotype.

File type: Plain text

Comments: 0 | Viewed: 76 times | Downloaded: 0 times

Tags:

abstracts
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african trypanosomiasis
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append term
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authors
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phenotype
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pubmed
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ranking
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sleeping sickness
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term
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term extraction
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terms
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text
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text mining
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text mining; term extraction; entity recognition

Uploader

Paul Fisher

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Pathway Term Enrichment Scores

Created: 2009-08-11 14:23:49

Credits: Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains a list of each pathway identified from day 7 post infection and linked to the Tir1 QTL. With each pathway is a list of terms that are common to both pathway and phenotype corpora. These terms were ranked accoring to their enrichement scores. The higher the score, the more significant the term is in relation to correlating the pathway with the African trypanosomiasis resistance phenotype.

File type: Plain text

Comments: 0 | Viewed: 110 times | Downloaded: 0 times

Tags:

abstracts
|
african trypanosomiasis
|
authors
|
concept profile
|
cosine vector space
|
data-driven
|
enrichment
|
pubmed
|
sleeping sickness
|
term
|
term extraction
|
terms
|
text
|
text mining
|
text mining; term extraction; entity recognition

Uploader

Paul Fisher

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Phenotype Concept Profile - Terms

Created: 2009-08-11 13:05:07 | Last updated: 2009-08-11 13:06:51

Credits: Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains a list of all terms extracted from the phenotype corpus, relating to African trypanosomiasis resistance in the mouse model. These terms were extracted using the following service: http://gopubmed4.biotec.tu-dresden.de/GoPubMedTermGenerationService/services/GoPubMedTermGeneration?wsdl These terms represent the concept profile for the phenotype.

File type: Plain text

Comments: 0 | Viewed: 179 times | Downloaded: 0 times

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