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Items tagged with "rshell" (14)

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Workflows (13)

Taverna 1 Original Uploader Wassinki	Mapping OligoNucleotides to an assembly (v7) Created: 13/02/09 @ 09:05:35 \| Last updated: 13/02/09 @ 09:08:20 Credits: Wassinki Pieter Neerincx Attributions: Blat against ENSEMBLE Danio_rerio_Genome BlatBlastCombi Blast against ENSEMBLE Danio_rerio_Genome AppendToFile Test Input for Mapping oligonucleotides to an assembly Input for Mapping oligonucleotides to an assembly License: Creative Commons Attribution-Share Alike 3.0 Unported License Version info The former version of the workflow expected that results from BioMART only report transcripts when the query (the probe in our case) are entirely encapsulated in an exon of that transcript. However, the BioMart service also returns transcripts when the query is not or only partially overlapping with an exon in the stretch on the assembly on which a transcript is defined. This resulted in too many oligos classified as having multiple transcripts or having multiple genes. ... Rating: 0.0 / 5 (0 ratings) \| Versions: 7 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 527 times \| Downloaded: 97 times Tags (7): biomart \| BLAST \| blat \| ensembl \| microarray \| r \| rshell	View Download (v7)
Taverna 1 Original Uploader Wassinki	Analysing workflows (v3) Created: 06/05/09 @ 08:49:59 \| Last updated: 06/05/09 @ 08:50:29 Credits: Wassinki Pieter Neerincx Katy Wolstencroft Marco Roos License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflows analyses workflows stored at the myExperiment site. It is used in the paper submitted to the Workshop on Scientific Workflow 2009. The workflow shows the task usage in the Taverna workflows stored at the myExperiment site The amount of services used The amount of local processors used The amount of scripting tasks The amount of sub workflows Furthermore it classifies the local services based on their intended function. The workflow has two inputs: ... Rating: 0.0 / 5 (0 ratings) \| Versions: 3 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 146 times \| Downloaded: 57 times Tags (9): analysis \| beanshell \| localworker \| moby \| myexperiment \| rshell \| scripting \| taverna \| web services	View Download (v3)
Taverna 1 Original Uploader Achille Zappa	t_tp53_mutations_info_by_morpho - "in progress" (v1) Created: 09/02/10 @ 13:45:16 \| Last updated: 04/06/10 @ 08:22:15 Credits: Achille Zappa License: Creative Commons Attribution-Share Alike 3.0 Unported License No description Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 68 times \| Downloaded: 10 times Tags (6): bioinformatics.istge.it \| bws \| plots \| rshell \| srs \| tp53	View Download (v1)
Taverna 2 Original Uploader Alan Williams	Basic example R workflow (v1) Created: 26/11/10 @ 15:13:46 \| Last updated: 26/11/10 @ 15:13:48 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License This workflow uses an R service running on localhost to calculate sin(0.45) Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 26 times \| Downloaded: 24 times Tags (4): example \| r \| rshell \| taverna2	View Download (v1)
Taverna 2 Original Uploader Alan Williams	R logical workflow (v1) Created: 26/11/10 @ 15:44:15 \| Last updated: 26/11/10 @ 15:44:18 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License Checks what the logical_input is in R. For an logical_input of TRUE - is_false should be FALSE and is_true TRUE FALSE - is_false should be TRUE and is_true FALSE For any other input values, is_false and is_true should both be NA Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 10 times \| Downloaded: 12 times Tags (4): example \| r \| rshell \| taverna 2	View Download (v1)
Taverna 2 Original Uploader Alan Williams	R string workflow (v1) Created: 26/11/10 @ 16:47:02 \| Last updated: 26/11/10 @ 16:47:04 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License This workflow determines the lower case version of the input string. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 12 times \| Downloaded: 13 times Tags (4): example \| r \| rshell \| taverna 2	View Download (v1)
Taverna 2 Original Uploader Alan Williams	R logical vector workflow (v1) Created: 26/11/10 @ 17:06:00 \| Last updated: 26/11/10 @ 17:06:03 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The workflow returns a list containing the logical inversion of the logical vector input Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 8 times \| Downloaded: 10 times Tags (4): example \| r \| rshell \| taverna 2	View Download (v1)
Taverna 2 Original Uploader Alan Williams	R numeric vector example (v1) Created: 26/11/10 @ 17:21:45 \| Last updated: 26/11/10 @ 17:21:48 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License This workflow takes a list of numbers and outputs a list containing the squares of the numbers and the sum of the numbers in the list Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 8 times \| Downloaded: 13 times Tags (4): example \| r \| rshell \| taverna 2	View Download (v1)
Taverna 2 Original Uploader Alan Williams	R integer vector example (v1) Created: 26/11/10 @ 17:34:05 \| Last updated: 26/11/10 @ 17:34:08 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License This workflow takes a list of integer values and returns a list containing the square of the input list's elements, and the sum of the input list's elements. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 8 times \| Downloaded: 6 times Tags (4): example \| r \| rshell \| taverna 2	View Download (v1)
Taverna 2 Original Uploader Alan Williams	R string vector example (v1) Created: 26/11/10 @ 18:06:35 \| Last updated: 26/11/10 @ 18:06:37 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The workflow takes a list of strings and outputs a list contains the lower-cased versions of the input elements, and also a concatenation of the input elements Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 19 times \| Downloaded: 13 times Tags (4): example \| r \| rshell \| taverna 2	View Download (v1)
Taverna 2 Original Uploader Alan Williams	R integer vector example (v1) Created: 29/11/10 @ 10:15:37 \| Last updated: 29/11/10 @ 10:15:40 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License This workflow takes a list of integer values and returns a list containing 100 modulus the list's elements, and the sum of the input list's elements. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 8 times \| Downloaded: 20 times Tags (4): example \| r \| rshell \| taverna 2	View Download (v1)
Taverna 2 Original Uploader Alan Williams	R PNG-value example (v2) Created: 29/11/10 @ 12:40:12 \| Last updated: 29/11/10 @ 13:13:11 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License This workflow produces a PNG plot on the figure port. Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 13 times \| Downloaded: 13 times Tags (4): example \| r \| rshell \| taverna 2	View Download (v2)
Taverna 2 Original Uploader Alan Williams	Population plot in R (v1) Created: 13/12/10 @ 16:28:15 \| Last updated: 13/12/10 @ 16:28:42 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License This workflow fetches the details of the countries in the world and then uses R to produce a histogram of the log of their population Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 52 times \| Downloaded: 31 times Tags (4): example \| r \| rshell \| taverna 2	View Download (v1)