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Items tagged with "authors" (9)
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Created: 10/08/09 @ 13:31:07 | Last updated: 10/08/09 @ 13:32:21
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow takes in a document containg text and removes any non-ascii characters. The cleaned text is then sent to a service in Dresden, to extract all scientific terms. These terms represent a concept profile for the input concpet. Any null values are also removed.
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Created: 10/08/09 @ 15:43:48
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow counts the number of articles in the pubmed database in which each term occurs, and identifies the total number of articles in the entire PubMed database. It also identified the total number of articles within pubmed so that a term enrichment score may be calculated.
The workflow also takes in a document containing abstracts that are related to a particular phenotype. Scientiifc terms are then extracted from this text and given a weighting according to the number of terms that ...
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Created: 10/08/09 @ 13:01:47 | Last updated: 11/08/09 @ 14:51:31
This pack contains a list of workflows and result files obtained from the analysis of candidate pathways believed to play a role in resistance to African Trypanosomiasis in the mouse model organism.
12 items in this pack Comments: 0 | Viewed: 186 times | Downloaded: 34 times Tags: |
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Created: 08/04/09 @ 13:36:10 | Last updated: 10/08/09 @ 12:37:37
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
This table contains a list of articles used to construct a list of issues with regards to the lack of systematic and explicit data analyses conducted in bioinformatcis. Each author list is linked directly to their publication within PubMed.
File type: Excel workbook Rating: 0.0 / 5 (0 ratings) | Comments: 1 | Viewed: 7 times | Downloaded: 5 times Tags: |
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Created: 10/08/09 @ 16:00:45
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
This excel file contains a list of genes linked to the resistance to African trypanosomiasis in the mouse. Genes from the Tir1 QTL were used in a search through PubMed. The results were then correlated to the trypanosomiasis resistance phenotype. The higher the score (and ranking) the more related to the phenotype the gene is likely to be. This is based on the co-occurrence of terms within the gene and phentoype corpora.
File type: Excel workbook Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 13 times | Downloaded: 0 times Tags: |
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Created: 11/08/09 @ 13:05:07 | Last updated: 11/08/09 @ 13:06:51
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
This file contains a list of all terms extracted from the phenotype corpus, relating to African trypanosomiasis resistance in the mouse model.
These terms were extracted using the following service: http://gopubmed4.biotec.tu-dresden.de/GoPubMedTermGenerationService/services/GoPubMedTermGeneration?wsdl
These terms represent the concept profile for the phenotype.
File type: Plain text Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 17 times | Downloaded: 0 times Tags: |
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Created: 11/08/09 @ 13:34:42 | Last updated: 11/08/09 @ 13:58:28
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
This file contains a count of each phenotype term extracted from corpus of phenotype abstracts. Each value represents the number of articles in the phenotype corpus the term appears. The use of this file is to calculate a cosine vector score for correlating a given concept (e.g. pathway or gene) with a phenotype.
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Created: 11/08/09 @ 14:08:41 | Last updated: 11/08/09 @ 14:15:58
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
This file contains all the abstracts for pathways found to be differentially expressed at day 7 post infection and intersect the Tir1 QTL region, from the African Trypanosomiasis project.
Each pathway is listed as ">> [Pathway Name]", together with a PubMed identifier, date, and abstract for each article. Each pathway has been restricted to 500 abstracts, and is given in the date range 31/12/2007 to 01/01/2009. Note, some pathways do not have any abstracts available due to th...
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Created: 11/08/09 @ 14:23:49
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
This file contains a list of each pathway identified from day 7 post infection and linked to the Tir1 QTL. With each pathway is a list of terms that are common to both pathway and phenotype corpora. These terms were ranked accoring to their enrichement scores. The higher the score, the more significant the term is in relation to correlating the pathway with the African trypanosomiasis resistance phenotype.
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