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Items tagged with "taverna 2" (26)

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Files (6)

Blob Introduction to WebServices, Workflows and Taverna

Created: 2015-01-22 12:00:28 | Last updated: 2015-01-22 12:29:03

Credits: User Aleksandra Pawlik

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: PowerPoint 2007 presentation

Comments: 0 | Viewed: 21 times | Downloaded: 22 times

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Blob Short introduction to Taverna 2.5

Created: 2015-01-22 12:37:00

Credits: User Aleksandra Pawlik User Stian Soiland-Reyes User Katy Wolstencroft User Alan Williams User Christian

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: PowerPoint 2007 presentation

Comments: 0 | Viewed: 29 times | Downloaded: 24 times

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Blob Building simple workflow in Taverna

Created: 2015-01-22 12:38:13

Credits: User Aleksandra Pawlik User Stian Soiland-Reyes User Katy Wolstencroft User Alan Williams User Christian

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: PowerPoint 2007 presentation

Comments: 0 | Viewed: 26 times | Downloaded: 14 times

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Blob Using REST services from Biocatalogue

Created: 2015-01-22 12:40:34 | Last updated: 2015-01-22 12:42:14

Credits: User Aleksandra Pawlik User Stian Soiland-Reyes User Katy Wolstencroft User Alan Williams User Christian

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: PowerPoint 2007 presentation

Comments: 0 | Viewed: 24 times | Downloaded: 11 times

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Blob Importing data from spreadsheets into Taverna workflows

Created: 2015-01-22 13:00:28

Credits: User Aleksandra Pawlik User Katy Wolstencroft User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: PowerPoint 2007 presentation

Comments: 0 | Viewed: 22 times | Downloaded: 10 times

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Groups (3)

Network-member Taverna 2.1 beta 2 Workbench examples

Unique name: taverna-2-1-beta-2-workbench-examples
Created: Thursday 18 June 2009 15:47:56 (UTC)

A group whose workflows are examples for Taverna 2.1 beta 2

0 shared items   |   0 announcements

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Network-member VLIZ Workshop Oct 2014

Unique name: VLIZOct2014
Created: Wednesday 01 October 2014 10:42:59 (UTC)

October 6th1300 -> 1400 Arrival and lunch1400 -> 1430 Introductions, round table, learning objectives1430 -> 1530 Presentation: Introduction to Workflows with Taverna, myExperiment and BiodiversityCatalogueRegister with myExperiment, join the group and download the ppts used for the rest of the day (below) Introduction to myGrid1530 -> 1600 Coffee1600 -> 1615 Setup check - T...

27 shared items   |   0 announcements

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Network-member Cranfield Training Course - 22nd January 2015

Unique name: cranfield2015
Created: Wednesday 21 January 2015 15:24:13 (UTC)

This is a group for the Taverna Training at Cranfield University, 22nd January 2015.Part 1: 10am-12amPart 2: 2pm - 3pmThe training focuses on the hands-on aspect. We will learn how to use a variety of tools to support bioinformatics research. What we will cover:Introduction to web services, workflows, Taverna, myExperiment and BioCatalogue.Building a simple workflow using Taverna Workbench...

6 shared items   |   0 announcements

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Packs (5)
Creator

Pack Taverna 2.1 beta 1 pack


Created: 2009-05-29 13:16:30 | Last updated: 2012-03-05 11:34:00

Introduction This is a pack for the first beta of Taverna 2.1 It includes a zip of Taverna 2.1 beta 1.  The zip includes the executable of Taverna 2.1 beta 1, some example files, release notes and a list of known issues.  If you have any comments or problems with the beta, then please post them as comments to this pack, or preferably to the taverna-hackers@lists.sourceforge.net Welcome to Taverna 2.1 Beta 1 workbench Due to user response to Taverna 2 workbench, major improveme...

2 items in this pack

Comments: 2 | Viewed: 68 times | Downloaded: 67 times

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Pack Taverna 2.1 beta 2 example workflows


Created: 2009-06-26 13:59:43 | Last updated: 2009-12-17 17:08:41

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9 items in this pack

Comments: 0 | Viewed: 247 times | Downloaded: 51 times

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Pack Taverna 2.1 beta 2


Created: 2009-07-02 12:51:11 | Last updated: 2009-09-21 14:48:06

Taverna workbench 2.1 beta 2 Due to user response to Taverna 2 workbench, major improvements have been made to the user interface of Taverna 2.1 Beta 2 workbench.  Many of these are described below. Installing Choose your download from the list of links in this pack depending on your operating system. Windows If you have administrator rights on your machine, you can download the Windows installer (taverna-workbench-2.1.b2-installer.exe). A wizard should guide you thro...

6 items in this pack

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Creator

Pack Taverna 2.2 starter pack


Created: 2010-06-11 13:40:05 | Last updated: 2012-01-03 15:46:09

The Taverna team are pleased to announce that Taverna 2.2.0 workbench and command line tool are now available for users to download. Taverna 2.2.0 includes improvements to the workbench user interface and gives users greater control over the workflow engine.  Here are a few of the new features in the workbench:     * Loading and sharing of service sets     * Ability to load and edit workflows that contain services that are offline     ...

20 items in this pack

Comments: 0 | Viewed: 821 times | Downloaded: 185 times

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Creator

Pack Natural product likeness filter


Created: 2011-05-13 19:35:39 | Last updated: 2011-08-29 14:25:47

Reference: Natural Product-likeness Score and Its Application for Prioritization of Compound Libraries Peter Ertl,* Silvio Roggo, and Ansgar Schuffenhauer Novartis Institutes for BioMedical Research, CH-4002 Basel, Switzerland http://peter-ertl.com/reprints/Ertl-JCIM-48-68-2008.pdf    The natural product likeness scorer implemented by Peter Ertl was originally devised to screen large compound libraries for natural product likeness in drug designing studies. His work...

3 items in this pack

Comments: 0 | Viewed: 148 times | Downloaded: 65 times

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Workflows (12)

Workflow Square A List Of Numbers (1)

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Simple workflow which squares a list of numbers.

Created: 2010-03-19 | Last updated: 2010-03-19

Credits: User Paul Miller

Workflow R logical workflow (1)

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Checks what the logical_input is in R. For an logical_input of TRUE - is_false should be FALSE and is_true TRUE FALSE - is_false should be TRUE and is_true FALSE For any other input values, is_false and is_true should both be NA

Created: 2010-11-26 | Last updated: 2010-11-26

Credits: User Alan Williams

Workflow R string workflow (1)

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This workflow determines the lower case version of the input string.

Created: 2010-11-26 | Last updated: 2010-11-26

Credits: User Alan Williams

Workflow R logical vector workflow (1)

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The workflow returns a list containing the logical inversion of the logical vector input

Created: 2010-11-26 | Last updated: 2010-11-26

Credits: User Alan Williams

Workflow R integer vector example (1)

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This workflow takes a list of integer values and returns a list containing the square of the input list's elements, and the sum of the input list's elements.

Created: 2010-11-26 | Last updated: 2010-11-26

Credits: User Alan Williams

Workflow R string vector example (1)

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The workflow takes a list of strings and outputs a list contains the lower-cased versions of the input elements, and also a concatenation of the input elements

Created: 2010-11-26 | Last updated: 2010-11-26

Credits: User Alan Williams

Workflow R integer vector example (1)

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This workflow takes a list of integer values and returns a list containing 100 modulus the list's elements, and the sum of the input list's elements.

Created: 2010-11-29 | Last updated: 2010-11-29

Credits: User Alan Williams

Workflow R PNG-value example (2)

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This workflow produces a PNG plot on the figure port.

Created: 2010-11-29 | Last updated: 2010-11-29

Credits: User Alan Williams

Workflow [untitled] (1)

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This workflow allows the user to search for processes that are involved with a certain gene. Using microarray-files (CEL-files), consisting of wild type and KO mice to which a stimulant is induced, the user can get an idea of the processes involved. (This is done using the global test and the literature weighted global test.) The results are then given as a text-file. Warning: workflow is not working (needs some revisions), all input is currently hardcoded! (You will have to change the file...

Created: 2011-04-26 | Last updated: 2011-04-26

Credits: User Dennis Leenheer

Uploader

Workflow Generate Atom Signatures of molecules give... (1)

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Reference: Natural Product-likeness Score and Its Application for Prioritization of Compound Libraries Peter Ertl,* Silvio Roggo, and Ansgar Schuffenhauer Novartis Institutes for BioMedical Research, CH-4002 Basel, Switzerland http://peter-ertl.com/reprints/Ertl-JCIM-48-68-2008.pdf    The natural product likeness scorer implemented by Peter Ertl was originally devised to screen large compound libraries for natural product likeness in drug designing studies. His work is re...

Created: 2011-05-13 | Last updated: 2011-05-13

Credits: User Kalai

Uploader

Workflow Download Structures from PubChem given che... (1)

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This workflow takes the input file containing chemical names and returns a single SDF file of structures. The names are searched against pubchem compounds via e-search. If the compound name is found an XML file containing PubChem ID is returned.The max return compound_ID is set to 1 which could be increased. If the compound name is not found then no ID is returned.  The pubchem compound_ID is then used to download structures from PubChem.  

Created: 2011-05-24 | Last updated: 2011-05-24

Credits: User Kalai User Michael Gerlich

Attributions: Workflow Download Entries from PubChem

Workflow ASTM D0427-04 - Preliminary Workflow (1)

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ASTM D0427-04: Standard Test Method for Shrinkage Factors of Soils by the Mercury MethodThis a preliminary version of a ASTM D0427 Workflow. This seems like a complex workflow but it does not. A lot of services is because I'm using a basic calculator web service to do simple a math calculations (http://www.dneonline.com/calculator.asmx) This simple web service calc use only two operands to do calc in four basic operations (add, divide, multiply and substract). So it's needed intermedi...

Created: 2016-04-25

Credits: User Juan Felipe Muñoz Fernández

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Non-Information Resource URI: http://www.myexperiment.org/tags/1319


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