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Items tagged with "web services" (8)

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Packs (3)

Creator:

Franck Tanoh

web services info

Created: 02/07/08 @ 17:15:34

This pack contains useful info related to bio services.

6 items in this pack

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web services

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Creator:

Paul Fisher

Newcastle NeuroScience

Created: 04/08/08 @ 17:35:59

This pack contains two PowerPoint presentations given at the 01/08/2008 Taverna and myExperiment tutorial.

3 items in this pack

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Creator:

Paul Fisher

Towards Genotype-Phenotype Correlations

Created: 08/04/09 @ 13:14:54 | Last updated: 08/08/09 @ 18:57:59

It is increasingly common to combine Microarray and Quantitative Trait Loci data to aid the search for candidate genes responsible for phenotypic variation. Workflows provide a means of systematically processing large datasets, and represent a framework for the re-use and the explicit declaration of experimental methods. In this pack is a paper which describes the issues facing the manual analysis of microarray and QTL data for the discovery of candidate genes underlying complex phenotypes.&n...

20 items in this pack

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Files (2)

Uploader:

Paul Fisher

A Taverna Users Guide

Created: 04/08/08 @ 17:40:21 | Last updated: 04/08/08 @ 17:40:22

Credits: Paul Fisher Katy Wolstencroft Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: PowerPoint presentation

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Uploader:

Paul Fisher

An Introduction to Taverna and myExperiment - Background

Created: 04/08/08 @ 17:49:10 | Last updated: 04/08/08 @ 17:49:11

Credits: Paul Fisher Franck Tanoh Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: PowerPoint presentation

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Workflows (3)

Taverna 1

Original Uploader

Paul Fisher

KEGG Pathway to Pubmed (v2)

Created: 09/03/08 @ 15:03:12 | Last updated: 03/12/09 @ 16:52:10

Credits: Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow takes in a list of KEGG pathway descriptions and searches the PubMed database for corresponding articles. Any matches to the pathways are then retrieved (abstracts only). These abstracts are then returned to the user. Example input for this workflow is as follows (new line separated): path:mmu04530 Tight junction - Mus musculus (mouse) path:mmu04540 Gap junction - Mus musculus (mouse) path:mmu04730 Long-term depre...

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Taverna 1

Original Uploader

Wassinki

Analysing workflows (v3)

Created: 13/02/09 @ 09:12:58 | Last updated: 06/05/09 @ 08:50:31

Credits: Wassinki Pieter Neerincx Katy Wolstencroft Marco Roos

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflows analyses workflows stored at the myExperiment site. It is used in the paper submitted to the Workshop on Scientific Workflow 2009. The workflow shows the task usage in the Taverna workflows stored at the myExperiment site The amount of services used The amount of local processors used The amount of scripting tasks The amount of sub workflows Furthermore it classifies the local services based on their intended function. The workflow has two inputs: ...

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Taverna 1

Original Uploader

Pierre Lindenbaum

snpNeighbours (v1)

Created: 14/05/09 @ 21:03:25 | Last updated: 14/05/09 @ 21:11:54

Credits: Pierre Lindenbaum

License: Creative Commons Attribution-Share Alike 3.0 Unported License

My first Taverna workflow: the input is the SNP "rs25". The Web Services invoked finds its position on the human genome and find its neighbours at 100bp. The XML result is then saved to a local file. The web services used here are under developpement and might be turned off in a near future.

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