Tag Results

Items tagged with "benchmarks" (146)

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Files (66)
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Blob AffyidToGeneAnnotationnoGOIDandPepstats.xml

Created: 2008-07-13 09:32:53 | Last updated: 2008-07-13 09:33:32

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 40 times | Downloaded: 25 times

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Blob KeggDbinfo.xml

Created: 2008-07-13 09:37:19 | Last updated: 2008-07-13 09:37:56

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 31 times | Downloaded: 26 times

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Blob GetVbidasOperationsInfo.xml

Created: 2008-07-13 09:38:32

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 32 times | Downloaded: 20 times

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Blob GetVbidasGenomeInfo.xml

Created: 2008-07-13 09:39:10

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

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Blob GetVbiGlimmerServiceOperationInfo.xml

Created: 2008-07-13 09:39:52

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

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Blob GetVbiGlimmerOperationsInfo.xml

Created: 2008-07-13 09:40:31 | Last updated: 2008-07-13 20:55:18

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 39 times | Downloaded: 21 times

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Blob GetPathportInterproOperationsInfo.xml

Created: 2008-07-13 09:41:16

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 31 times | Downloaded: 21 times

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Blob GetCondorblastInfo.xml

Created: 2008-07-13 09:42:01 | Last updated: 2008-07-13 09:42:31

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

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Blob GetCondorBlastOperationInfo.xml

Created: 2008-07-13 09:43:06

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 34 times | Downloaded: 22 times

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Blob EmblAccToPredictArabidopsisGenes.xml

Created: 2008-07-13 09:43:52

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 35 times | Downloaded: 23 times

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Blob ListKeggGenomes.xml

Created: 2008-07-13 09:44:30

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 32 times | Downloaded: 23 times

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Blob ListEmbossDatabases.xml

Created: 2008-07-13 09:45:07 | Last updated: 2008-07-13 20:54:47

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 37 times | Downloaded: 22 times

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Blob KeggPathwayIdToGeneEntries.xml

Created: 2008-07-13 09:45:46

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 30 times | Downloaded: 23 times

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Blob KeggDatabaseNameToDatabaseInfo.xml

Created: 2008-07-13 09:46:22

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 28 times | Downloaded: 21 times

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Blob EmblAccToKeggPathway2.xml

Created: 2008-07-13 09:46:57

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 29 times | Downloaded: 23 times

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Blob EmblAccToEmblRecordUsingXEMBL.xml

Created: 2008-07-13 09:47:44

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 29 times | Downloaded: 23 times

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Blob EmblAccToEmblRecordUsingSeqret.xml

Created: 2008-07-13 09:49:28 | Last updated: 2008-07-13 20:54:21

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 34 times | Downloaded: 20 times

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Blob EmblAccToEmblRecordUsingDDBJ.xml

Created: 2008-07-13 09:50:06

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 33 times | Downloaded: 20 times

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Blob AffyidToProteinAnnotationPipeline.xml

Created: 2008-07-13 09:50:44

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 28 times | Downloaded: 23 times

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Blob AffyidToMedlineRecords.xml

Created: 2008-07-13 09:51:23

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 30 times | Downloaded: 23 times

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Blob AffyidToMedlineIds.xml

Created: 2008-07-13 09:52:02

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 29 times | Downloaded: 24 times

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Blob AffyidToGeneAnnotationPipeline1.xml

Created: 2008-07-13 09:52:36

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 29 times | Downloaded: 23 times

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Blob AffyidToFastaSequence.xml

Created: 2008-07-13 09:53:17

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 28 times | Downloaded: 22 times

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Blob AffyidToEmblRecord.xml

Created: 2008-07-13 09:53:59

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 27 times | Downloaded: 31 times

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Blob AffyidToBlastxPDB.xml

Created: 2008-07-13 09:55:12

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 33 times | Downloaded: 26 times

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Blob AffyidToBlastnHtgoMus.xml

Created: 2008-07-13 09:55:47 | Last updated: 2008-07-13 20:53:51

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 34 times | Downloaded: 23 times

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Blob workflow.xml

Created: 2008-07-13 09:56:22

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 33 times | Downloaded: 29 times

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Blob seqvista.xml

Created: 2008-07-13 09:56:57

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 30 times | Downloaded: 24 times

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Blob interproscanForGeneAnnotation.xml

Created: 2008-07-13 09:57:31

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 30 times | Downloaded: 22 times

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Blob interproscan.xml

Created: 2008-07-13 09:58:14

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 34 times | Downloaded: 30 times

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Blob getExperimentIds.xml

Created: 2008-07-13 09:58:46

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 28 times | Downloaded: 21 times

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Blob biomoby.xml

Created: 2008-07-13 09:59:20

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 34 times | Downloaded: 29 times

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Blob SnpIdToComplexAnnotationWithGo.xml

Created: 2008-07-13 09:59:58

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 28 times | Downloaded: 22 times

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Blob SnpIdToComplexAnnotation.xml

Created: 2008-07-13 10:00:37

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 33 times | Downloaded: 22 times

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Blob SNPBasedAnnotationWithAlternate.xml

Created: 2008-07-13 10:01:38

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 26 times | Downloaded: 21 times

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Blob SNPBasedAnnotation.xml

Created: 2008-07-13 10:02:42

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 32 times | Downloaded: 21 times

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Blob NFKBIE_AFFYID_TO_ANNOTATION_alternate.xml

Created: 2008-07-13 10:04:32

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 29 times | Downloaded: 22 times

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Blob NFKBIE_AFFYID_TO_ANNOTATION.xml

Created: 2008-07-13 10:05:10

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 28 times | Downloaded: 24 times

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Blob KeggPathwayIdToPathwayMap.xml

Created: 2008-07-13 10:05:48

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 29 times | Downloaded: 23 times

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Blob InterProScanSample.xml

Created: 2008-07-13 10:06:24

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 29 times | Downloaded: 20 times

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Blob GoGraph.xml

Created: 2008-07-13 10:07:03

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 31 times | Downloaded: 23 times

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Blob GetSwissProtRecord.xml

Created: 2008-07-13 10:07:39

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 28 times | Downloaded: 25 times

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Blob GetEmblRecord2.xml

Created: 2008-07-13 10:08:14

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 29 times | Downloaded: 22 times

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Blob GetEmblRecord.xml

Created: 2008-07-13 10:08:56

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 27 times | Downloaded: 24 times

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Blob GetArrayDataUrl.xml

Created: 2008-07-13 10:10:12

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 25 times | Downloaded: 21 times

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Blob GeneAnnotationIsmb.xml

Created: 2008-07-13 10:10:47

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 27 times | Downloaded: 22 times

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Blob GDMageIds.xml

Created: 2008-07-13 10:11:28

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 29 times | Downloaded: 21 times

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Blob EmblAccToKeggPathwayForPaper.xml

Created: 2008-07-13 10:12:08

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 32 times | Downloaded: 20 times

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Blob EmblAccToKeggPathway3.xml

Created: 2008-07-13 10:12:53

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 28 times | Downloaded: 25 times

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Blob EmblAccToKeggGeneEntry.xml

Created: 2008-07-13 10:13:29

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 30 times | Downloaded: 24 times

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Blob EmblAccToGoIds.xml

Created: 2008-07-13 10:14:10

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 31 times | Downloaded: 26 times

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Blob BlastagainstPDBatDDBJ.xml

Created: 2008-07-13 10:14:49

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 31 times | Downloaded: 21 times

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Blob BlastNagainstDDBJatDDBJ.xml

Created: 2008-07-13 10:15:29

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 30 times | Downloaded: 25 times

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Blob BiomartAndEmboss.xml

Created: 2008-07-13 10:16:18

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 31 times | Downloaded: 25 times

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Blob ArrayExpressWF.xml

Created: 2008-07-13 10:17:02

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 31 times | Downloaded: 24 times

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Blob AnnotationPipelineNoKeggForSEEK.xml

Created: 2008-07-13 10:22:54

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 27 times | Downloaded: 22 times

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Blob AnnotationPipelineForSEEK.xml

Created: 2008-07-13 10:23:34

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 28 times | Downloaded: 23 times

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Blob AnilClustering.xml

Created: 2008-07-13 10:24:10

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 31 times | Downloaded: 26 times

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Blob AmbitTestWorkflow.xml

Created: 2008-07-13 10:24:44

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 35 times | Downloaded: 24 times

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Blob AffyidToGoGraph.xml

Created: 2008-07-13 20:24:03

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 31 times | Downloaded: 26 times

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Blob AffyidToGeneAnnotationforPaper.xml

Created: 2008-07-13 20:24:51

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 29 times | Downloaded: 26 times

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Blob AffyidToGeneAnnotation4.xml

Created: 2008-07-13 20:25:33

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 32 times | Downloaded: 25 times

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Blob AffyidToGeneAnnotation3.xml

Created: 2008-07-13 20:26:13

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 33 times | Downloaded: 26 times

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Blob AffyidToGeneAnnotation2.xml

Created: 2008-07-13 20:27:10

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 39 times | Downloaded: 22 times

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Blob AffyidToGeneAnnotation10.xml

Created: 2008-07-13 20:27:52

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 30 times | Downloaded: 26 times

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Blob AffyIdToGeneAnnoation(NFKBIE)_final.xml

Created: 2008-07-13 20:28:28

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Comments: 0 | Viewed: 50 times | Downloaded: 33 times

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Packs (3)
Creator

Pack Workflow discovery benchmarks


Created: 2008-07-12 11:20:23 | Last updated: 2008-10-09 16:41:46

This pack contains benchmarks that measure how bioinformaticians discover Taverna workflows. Several subpacks are available: Collection of workflows by Paul Fisher, used in benchmarks PR2 and CA2 Collection of workflows by Peter Li, used in benchmarks PR2 and CA2  

7 items in this pack

Comments: 0 | Viewed: 141 times | Downloaded: 46 times

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Creator

Pack Paul Fisher workflows for benchmarks PR and CA2


Created: 2008-07-12 20:26:49 | Last updated: 2008-07-13 09:21:55

Please note that the workflows in this pack are not being maintained. For updated workflows check out http://www.myexperiment.org/users/43

77 items in this pack

Comments: 0 | Viewed: 311 times | Downloaded: 57 times

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Creator

Pack Peter Li workflows for benchmarks PR and CA2


Created: 2008-07-13 20:32:39 | Last updated: 2008-07-13 20:47:19

Please note that the workflows in this pack are not being maintained. For updated workflows check out http://www.myexperiment.org/users/221

66 items in this pack

Comments: 0 | Viewed: 149 times | Downloaded: 22 times

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Workflows (77)

Workflow unnested_qtl_pathway_3.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow unnested_qtl_pathway_2.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow geneId_to_pathway.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow blast_simplifier.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow add_ncbi_to_string.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow Gi_to_pathway.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow parse_swiss.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow geneHunt.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow ensembl_gene_info.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow parse_gene_info.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow ensembl_genes_to_go_terms.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow parse_uniprot_2.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow gene_ontology_analysis_2.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow gene_ontology_analysis.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow complete_2_text_mining.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow sub_gene_info_to_uniprot.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow complete_3.1.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow extract_uniprot_embl_gi.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow maxdBrowse_geneHunt.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow Probeset_id_2_Swissport_id.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow text_mining.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow complete_2.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow remove_nulls.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow linking.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow lister.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow Ensembl_id_2_Swissport_id.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow parse_uniprot.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow complete.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow complete_deleted.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow maxdBrowse.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow remove_duplicates_full.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow remove_duplicates.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow complete_test.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow qtl_analysis.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow uniprot_search.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow interpro_scan.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow interpro_url.xml (1)

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An example of how a more complex workflow can federate multiple resources to perform data mining. In this case a single input data item in the form of a probe set identifier is cross referenced to data sets in multiple locations to answer a kind of 'show me everything about this data' question.

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow parse_sequence.xml (1)

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No description

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow swiss_and_name_seq.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow swiss_and_name.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow expression_values.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow parse_gene_name.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow metabolic_pathway.xml (1)

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A list of Kegg entires are supplied to the Kegg database which then retrieves the associated metabolic pathways for each entry supplied. e.g. Ids takes in a value of 351, whilst abbr takes in a value of hsa. Thus hsa:351 corresponds to neurodegenerative disorders and alzheimers disease pathways. [fisherp@cs.man.ac.uk]

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow ACC_to_GI.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow Ensembl_genes_to_swiss_id.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow string_complete.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow gene_info_to_gene_name.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow SUB_genes_info_names.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow bind-idsearch.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow bind-text.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow genes_from_probesets.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow probeset_in_qtl.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow database_and_genes.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow protein_protein_interactions.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow gene_by_species.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow blast_GO.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow BlastComparer.xml (1)

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Perform a blastp search on protein sequence and extract information based on the user input, e.g. a list of GI numbers. N.B. this workflow does not function correctly as it is designed for use with NCBI blast scripts. Some errors may occur. Please use two blast text file inputs for a secure result output.

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow stringList.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow maxdBrowse_strings.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow getgenesbyspecies.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow gene_ontology_diagram.xml (1)

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This workflow builds up a subgraph of the Gene Ontology (http://www.geneontology.org) to show the context for a supplied term or terms. It shows this context by colouring all ancestors of the term, all children and all siblings. By default, ancestors of the supplied term or terms are coloured orange, siblings purple and direct children teal. Other terms appear in the default wheat colour.

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow affy_ids.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow example.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow metabolic.xml (1)

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An example of how a more complex workflow can federate multiple resources to perform data mining. In this case a single input data item in the form of a probe set identifier is cross referenced to data sets in multiple locations to answer a kind of 'show me everything about this data' question.

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow interpro_scan_3.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow interpro_scan_2.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow linking1.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow genomic_sequence.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow linking3.xml (1)

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This workflow links between a specified EMBL accesion number to corresponding identifiers in the MEDLINE database.

Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow protein2dna.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow blast_to_fasta.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow blast.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow DDBJ_BLAST.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Paul Fisher

Workflow AffyidToGeneAnnotationnoGOIDandPepstats.xml (1)

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Created: 2008-07-12 | Last updated: 2008-07-12

Credits: User Peter Li

Workflow Make 28 CPUh load on the Grid (1)

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This workflow makes 28 CPU hours load on a Grid. Therefore it calls 100 times (represented by 100 input tokens) the program "makeload", which makes 1000 Seconds load each. The processing is done recurrent, so you can use this workflow to benchmark the speedup of your Grid environment, or just to heat up your computer center... This workflow also serves as an example of a typical parameter study modeled with GWorkflowDL. Of cause this workflow can only be invoked with a X509 certif...

Created: 2008-11-25 | Last updated: 2008-12-17

Credits: User Andreas Hoheisel

Workflow NMR Shift Dereplication benchmark in SWI-P... (1)

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Created: 2010-05-14 | Last updated: 2010-05-14

Credits: User Samuel Lampa

Workflow NMR Shift Dereplication benchmark in SWI-P... (1)

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Created: 2010-05-14 | Last updated: 2010-05-14

Credits: User Samuel Lampa

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Linked Data

Non-Information Resource URI: http://www.myexperiment.org/tags/880


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