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Items tagged with "localworker" (101)

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Workflows (100)

Taverna 1 Original Uploader Alan Williams	Ask - no parameters (v1) Created: 27/09/08 @ 16:33:03 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The ask service displays a prompt with no title and no prompt message. If the user presses cancel, then a service failure is generated. If the user presses OK then their input, even if it is empty, is passed to the answer port of the ask service and so to the output of the workflow. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 30 times \| Downloaded: 28 times Tags (2): example \| localworker	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Ask - just title parameter (v1) Created: 27/09/08 @ 16:33:49 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The ask service displays a prompt with the title 'Some title' but no prompt message. If the user presses cancel, then a service failure is generated. If the user presses OK then their input, even if it is empty, is passed to the answer port of the ask service and so to the output of the workflow. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 21 times \| Downloaded: 21 times Tags (2): example \| localworker	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Ask - just message parameter (v1) Created: 27/09/08 @ 16:34:35 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The ask service displays a prompt with no title but with the prompt message 'Some message'. If the user presses cancel, then a service failure is generated. If the user presses OK then their input, even if it is empty, is passed to the answer port of the ask service and so to the output of the workflow. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 30 times \| Downloaded: 20 times Tags (2): example \| localworker	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Ask - title and message parameters (v1) Created: 27/09/08 @ 16:35:15 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The ask service displays a prompt with 'Some title' and the prompt message 'Some message'. If the user presses cancel, then a service failure is generated. If the user presses OK then their input, even if it is empty, is passed to the answer port of the ask service and so to the output of the workflow. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 22 times \| Downloaded: 19 times Tags (2): example \| localworker	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Byte[] to string - non empty value (v1) Created: 27/09/08 @ 16:36:09 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The beanshell converts the string 'hello' to a byte array which is then converted back to the string 'hello' by the Byte[]_to_string service. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 18 times \| Downloaded: 21 times Tags (2): example \| localworker	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Byte[] to string - empty value (v1) Created: 27/09/08 @ 16:37:04 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The beanshell converts the empty string '' to a byte array which is then converted back to the empty string '' by the Byte[]_to_string service. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 27 times \| Downloaded: 22 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Choose - no title or message parameters (v1) Created: 27/09/08 @ 16:37:50 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The split_string_into_string_list_by_regular_expression parses the string 'a,b,c,d,e' and outputs the list ['a','b','c','d','e']. The choose service displays a dialog with no title or message. The user is able to choose from the values ['a','b','c','d',e']. When the user presses OK the value the user chose is passed to the answer port of the choose service and so to the output of the workflow. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 19 times \| Downloaded: 18 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Choose - title parameter (v1) Created: 27/09/08 @ 16:38:43 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The split_string_into_string_list_by_regular_expression parses the string 'a,b,c,d,e' and outputs the list ['a','b','c','d','e']. The choose service displays a dialog with 'Some title' but no message. The user is able to choose from the values ['a','b','c','d',e']. When the user presses OK the value the user chose is passed to the answer port of the choose service and so to the output of the workflow. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 17 times \| Downloaded: 20 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Choose - title and message parameters (v1) Created: 27/09/08 @ 16:40:10 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The split_string_into_string_list_by_regular_expression parses the string 'a,b,c,d,e' and outputs the list ['a','b','c','d','e']. The choose service displays a dialog with 'Some title' and with 'Some message'. The user is able to choose from the values ['a','b','c','d',e']. When the user presses OK the value the user chose is passed to the answer port of the choose service and so to the output of the workflow. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 22 times \| Downloaded: 18 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Choose - single element list (v1) Created: 27/09/08 @ 16:40:51 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The split_string_into_string_list_by_regular_expression parses the string 'a' and outputs the list ['a']. The choose service displays a dialog with 'Some title' and 'Some message'. The user is only able to choose the value 'a'. When the user presses OK 'a' is passed to the answer port of the choose service and so to the output of the workflow. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 18 times \| Downloaded: 21 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Concatenate files - echo results and multiple files (v1) Created: 27/09/08 @ 16:41:51 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The workflow splits the string 'a,b,c,d,e' into its five elements and saves the individual strings to five temporary files. The file paths to those files are then output by the create_and_populate_temporary_file beanshell. The create_temporary_file beanshell creates a file to which the concatentation can be written. The concatenate_files service concatenates the five files and writes the result to the temporary output file. Because the displayresults port has been given a default value of... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 41 times \| Downloaded: 22 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Concatenate files - echo results but no files (v1) Created: 27/09/08 @ 16:42:40 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The split_string_into_string_list_by_regular_expresson outputs an empty list since the string to be split is defaulted to ''. As there are no input values, the create_and_populate_temporary_file generates an empty list. The create_temporary_file beanshell creates a file to which the concatentation can be written. The concatenate_files service does not write anything to the temporary output file. Because the displayresults port has been given a default value of 'true', the empty string is ... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 26 times \| Downloaded: 23 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Concatenate files - multiple files (v1) Created: 27/09/08 @ 16:43:43 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The workflow splits the string 'a,b,c,d,e' into its five elements and saves the individual strings to five temporary files. The file paths to those files are then output by the create_and_populate_temporary_file beanshell. The create_temporary_file beanshell creates a file to which the concatentation can be written. The concatenate_files service concatenates the five files and writes the result to the temporary output file. Because the displayresults port has no value, the results are not... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 33 times \| Downloaded: 20 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Concatenate two strings (v1) Created: 27/09/08 @ 16:45:08 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The concatenate two strings service takes the strings 'good' and 'bye' and returns the result 'goodbye'. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 23 times \| Downloaded: 24 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Concatenate two strings - empty strings (v1) Created: 27/09/08 @ 16:45:57 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The concatenate two strings service takes two empty strings and returns an empty string. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 19 times \| Downloaded: 21 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Create lots of strings (v1) Created: 27/09/08 @ 16:46:38 \| Last updated: 27/09/08 @ 16:48:00 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The create lots of strings service returns a list containing a large number of strings. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 22 times \| Downloaded: 23 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Decode base64 to byte[] (v1) Created: 27/09/08 @ 16:50:22 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The decode base64 to byte[] service decodes the base64 string. The byte array is then converted into the string 'Hello world'. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 28 times \| Downloaded: 49 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Encode byte[] to base64 (v1) Created: 27/09/08 @ 16:51:08 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The encode byte[] to base 64 service encodes the bytes representing (in the local character set) 'hello'. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 31 times \| Downloaded: 32 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Execute cmd line app - unix - /bin/ls of temporary directory (v1) Created: 27/09/08 @ 16:52:16 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License Note that this workflow only works on Unix systems. The get_temporary_directory beanshell returns the path to the directory in which temporary files are held. This value is passed to the args port of the execute_cmd_line_app service. The command port of that service has been defaulted to '/bin/ls'. The execute_cmd_line_app service runs the /bin/ls command on the temporary directory. The result is passed to its result port and then to the out port of the workflow. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 36 times \| Downloaded: 40 times Tags (4): example \| localworker \| mygrid \| unix-only	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Execute cmd line app - unix - /bin/ls -R of temporary directory (v1) Created: 27/09/08 @ 16:52:59 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License Note that this workflow only works on Unix systems. The get_temporary_directory beanshell returns the path to the directory in which temporary files are held. This value is passed to the create_and_populate_list beanshell which creates a list of '-R' and the path. The resultant list is passed to the args port of the Execute_cmd_line_app service. The command port of that service has been defaulted to '/bin/ls'. The execute_cmd_line_app service runs the /bin/ls -R command on the temporary ... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 37 times \| Downloaded: 26 times Tags (4): example \| localworker \| mygrid \| unix-only	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Fail if false - false value (v1) Created: 27/09/08 @ 16:54:07 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The fail if true service throws an exception if given the value 'false'. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 24 times \| Downloaded: 23 times Tags (4): example \| expected-to-fail \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Fail if false - true value (v1) Created: 27/09/08 @ 16:54:53 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The fail if true service executes without an exception if given the value 'true'. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 16 times \| Downloaded: 20 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Fail if false - non false value (v1) Created: 27/09/08 @ 16:55:35 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The fail if true service executes without an exception if given a non-false value such as 'fred'. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 14 times \| Downloaded: 19 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Fail if true - true value (v1) Created: 27/09/08 @ 16:56:32 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The fail if true service throws an exception when passed the value true. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 17 times \| Downloaded: 20 times Tags (4): example \| expected-to-fail \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Fail if true - false value (v1) Created: 27/09/08 @ 16:57:09 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The fail if true service executes without an exception if given the value 'false'. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 15 times \| Downloaded: 19 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Fail if true - non true value (v1) Created: 27/09/08 @ 16:57:48 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The fail if true service executes without an exception if given a value that is not true e.g. 'fred'. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 15 times \| Downloaded: 18 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	FIlter list of strings by regex with a suitable regular expression (v1) Created: 27/09/08 @ 16:58:25 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The workflow filters the five element list split from the first service and returns the three elements that match the regular expression. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 27 times \| Downloaded: 27 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	FIlter list of strings by regex with an unsuitable regular expression (v1) Created: 27/09/08 @ 16:59:01 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The workflow filters the five element list split from the first service and returns an empty list as no elements match. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 18 times \| Downloaded: 18 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	FIlter list of strings by regex extracting the specified group in the matches (v1) Created: 27/09/08 @ 16:59:41 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The workflow examines the five element list split from the first service. For each element, if it contains an 'a' followed by two characters, then that triple is included in the output. Thus, for the input ['a','b','abcde','cdef','axy'], only 'abcde' and 'axy' contain a match and so ['abc', 'axy'] is output. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 24 times \| Downloaded: 21 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	FIlter list of strings by regex extracting the specified group in the matches (v1) Created: 27/09/08 @ 17:00:19 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The workflow examines the five element list split from the first service. For each element, if it contains an 'a' followed by two characters, then the two characters after the 'a' are included in the output. Thus, for the input ['a','b','abcde','cdef','axy'], only 'abcde' and 'axy' contain a match and so ['bc', 'xy'] is output. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 17 times \| Downloaded: 23 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	FIlter list of strings by regex extracting the specified group in the matches (v1) Created: 27/09/08 @ 17:01:08 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The workflow examines the five element list split from the first service. For each element, if it contains an 'a' followed by two characters, the second character after the 'a' is included in the output. Thus, for the input ['a','b','abcde','cdef','axy'], only 'abcde' and 'axy' contain a match and so ['c', 'y'] is output. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 17 times \| Downloaded: 23 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Get image from URL - only url specified (v1) Created: 27/09/08 @ 17:02:41 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License Retrieve the image at http://www.mygrid.org.uk/files/2008/09/dragon-workflow.png using just the url parameter Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 25 times \| Downloaded: 34 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Get image from URL - url and base specified (v1) Created: 27/09/08 @ 17:03:20 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License Retrieve the image at http://www.mygrid.org.uk/files/2008/09/dragon-workflow.png using both the url and base parameters Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 17 times \| Downloaded: 18 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Get image URLs from HTTP document (v1) Created: 27/09/08 @ 17:03:55 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License Retrieve the web page at http://www.mygrid.org.uk/usermanual1.7/user_gettings_started.html and examine it for images. The workflow should return an empty list. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 17 times \| Downloaded: 24 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Get image URLs from HTML document and output the results (v1) Created: 27/09/08 @ 17:05:30 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License Retrieve the web page at http://www.mygrid.org.uk, examine it for images and output the images. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 30 times \| Downloaded: 29 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Get web page from URL - just url (v1) Created: 27/09/08 @ 17:06:26 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License Fetches a web page from http://www.mygrid.org.uk/tools using just the url parameter of the service. Note that when viewed, the HTML may not be rendered correctly. However, the HTML may be viewed by rendering the result as plain text. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 21 times \| Downloaded: 24 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Get web page from URL - url and base (v1) Created: 27/09/08 @ 17:07:08 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License Fetches a web page from http://www.mygrid.org.uk/tools with the base parameter as "http://www.mygrid.org.uk" and the url as "/tools". Note that when viewed, the HTML may not be rendered correctly. However, the HTML may be viewed by rendering the result as plain text. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 27 times \| Downloaded: 23 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	List files by extension - several answers (v1) Created: 27/09/08 @ 17:07:44 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The create_temporary_directory beanshell creates a temporary directory and outputs the path to that directory. The populate_directory beanshell creates several files within the temporary directory. Once the directory has been populated, it is examined by the List_files_by_extension service and the file paths to the three files ending in ".png" are output. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 26 times \| Downloaded: 21 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	List files by extension - single answer (v1) Created: 27/09/08 @ 17:08:34 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The create_temporary_directory beanshell creates a temporary directory and outputs the path to that directory. The populate_directory beanshell creates several files within the temporary directory. Once the directory has been populated, it is examined by the List_files_by_extension service and the file path to the one file ending in ".bin" is output. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 18 times \| Downloaded: 19 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	List files by extension - no answer (v1) Created: 27/09/08 @ 17:09:11 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The create_temporary_directory beanshell creates a temporary directory and outputs the path to that directory. The populate_directory beanshell creates several files within the temporary directory. Once the directory has been populated, it is examined by the List_files_by_extension service. Since no files end in ".fred", an empty list is output. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 15 times \| Downloaded: 19 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	List files by extension - empty directory (v1) Created: 27/09/08 @ 17:09:50 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The create_temporary_directory beanshell creates a temporary directory and outputs the path to that directory. The empty directory is examined by the List_files_by_extension service. Since no files end in ".png", an empty list is output. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 14 times \| Downloaded: 18 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	List files by regex - several answers (v1) Created: 27/09/08 @ 17:11:01 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The create_temporary_directory beanshell creates a temporary directory and outputs the path to that directory. The populate_directory beanshell creates several files within the temporary directory. Once the directory has been populated, it is examined by the List_files_by_regex service and the file paths matching the regular expression '.i.', i.e. those containing an 'i', are output. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 18 times \| Downloaded: 20 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	List files by regex - single answer (v1) Created: 27/09/08 @ 17:11:34 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The create_temporary_directory beanshell creates a temporary directory and outputs the path to that directory. The populate_directory beanshell creates several files within the temporary directory. Once the directory has been populated, it is examined by the List_files_by_regex service and the file path to the one file matching 'c.' i.e. starting with 'c' is output. Rating:* 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 18 times \| Downloaded: 17 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	List files by regex - no answer (v1) Created: 27/09/08 @ 17:12:08 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The create_temporary_directory beanshell creates a temporary directory and outputs the path to that directory. The populate_directory beanshell creates several files within the temporary directory. Once the directory has been populated, it is examined by the List_files_by_regex service. Since no files match the regular expression 'x.' i.e. no files have a name that starts with 'x', an empty list is output. Rating:* 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 18 times \| Downloaded: 21 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	List files by regex - empty directory (v1) Created: 27/09/08 @ 17:12:38 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The create_temporary_directory beanshell creates a temporary directory and outputs the path to that directory. The empty directory is examined by the List_files_by_regex service. Since there are no files, an empty list is output. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 15 times \| Downloaded: 19 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Merge string list to string - default separator (v1) Created: 27/09/08 @ 17:13:27 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The merge string list to string service takes the list ['a','b','c'] and outputs the string 'a b c'. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 19 times \| Downloaded: 20 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Merge string list to string - colon separator (v1) Created: 27/09/08 @ 17:13:59 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The merge string list to string service takes the list ['a','b','c'] and using the separator ':' outputs the string 'a:b:c'. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 21 times \| Downloaded: 24 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Merge string list to string - empty list (v1) Created: 27/09/08 @ 17:14:32 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The merge string list to string service takes an empty list [] and outputs an empty string ''. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 20 times \| Downloaded: 21 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Pad numeral with leading 0s - default targetlength (v1) Created: 27/09/08 @ 17:15:02 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The pad numeral with leading 0s takes the input '12' and pads it to the default target length of 7, yielding the output '0000012'. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 15 times \| Downloaded: 18 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Pad numeral with leading 0s - specified targetlength (v1) Created: 27/09/08 @ 17:15:38 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The pad numeral with leading 0s takes the input '12' and pads it to the specified target length of 4, yielding the output '0012'. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 15 times \| Downloaded: 18 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Pad numeral with leading 0s - too short targetlength (v1) Created: 27/09/08 @ 17:16:08 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The pad numeral with leading 0s takes the input '12' and because the specified target length of 1 is too short, yields the output '12'. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 15 times \| Downloaded: 17 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Read GenBank file (v1) Created: 27/09/08 @ 17:16:45 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The Get_web_page_from_URL downloads a file from myExperiment that contains GenBank data. That data is then saved to a temporary file generated by the create_and_populate_temporary_file beanshell. The path to the temporary file is then passed to the Read_GenBank_file service. That service reads the file and converts the GenBank data into Agave format. The result is then sent to the workflow's out port. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 40 times \| Downloaded: 32 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Read SwissProt file (v1) Created: 27/09/08 @ 17:17:24 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The Get_web_page_from_URL downloads a file from myExperiment that contains SwissProt data. That data is then saved to a temporary file generated by the create_and_populate_temporary_file beanshell. The path to the temporary file is then passed to the Read_SwissProt_file service. That service reads the file and converts the SwissProt data into Agave format. The result is then sent to the workflow's out port. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 25 times \| Downloaded: 21 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Read text file (v1) Created: 27/09/08 @ 17:18:07 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The beanshell write the string 'hello' to a temporary file. The filepath to the temporary file is then passed to the Read_text_file service which reads the file and outputs the string 'hello'. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 25 times \| Downloaded: 28 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Read text file - several lines (v1) Created: 27/09/08 @ 17:18:46 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The beanshell write the string 'hello' four times separated by a new lineto a temporary file. The filepath to the temporary file is then passed to the Read_text_file service which reads the file and outputs the string 'hello hello hello hello'. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 26 times \| Downloaded: 24 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Read text file - empty file (v1) Created: 27/09/08 @ 17:19:17 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The beanshell creates an empty temporary file. The filepath to the temporary file is then passed to the Read_text_file service which reads the file and outputs the empty string ''. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 21 times \| Downloaded: 19 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Remove duplicate strings (v1) Created: 27/09/08 @ 17:19:50 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The remove duplicate strings service takes the list ['a','b','c','b','a','d'], strips out duplicate strings and outputs the result ['a','b','c','d']. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 18 times \| Downloaded: 23 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Remove duplicate strings - empty list (v1) Created: 27/09/08 @ 17:20:32 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The remove duplicate strings service takes the empty list [] and outputs the result []. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 17 times \| Downloaded: 21 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Reverse complement DNA (v1) Created: 27/09/08 @ 17:21:03 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The Reverse Complement DNA service takes the DNA sequence, here defaulted to 'gatcctccat' and outputs the corresponding reverse complement sequence, in this example, 'atggaggatc'. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 27 times \| Downloaded: 30 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Select - no title or message parameters (v1) Created: 27/09/08 @ 17:21:37 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The split_string_into_string_list_by_regular_expression parses the string 'a,b,c,d,e' and outputs the list ['a','b','c','d','e']. The select service displays a dialog with no title or message. The user is able to select from the values ['a','b','c','d',e']. When the user presses OK the value the user selected is passed to the answer port of the select service and so to the output of the workflow. If the user clicks Cancel then a service failure is generated. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 18 times \| Downloaded: 18 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Select - title parameter (v1) Created: 27/09/08 @ 17:22:04 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The split_string_into_string_list_by_regular_expression parses the string 'a,b,c,d,e' and outputs the list ['a','b','c','d','e']. The select service displays a dialog with 'Some title' but no message. The user is able to select from the values ['a','b','c','d',e']. When the user presses OK the value the user selected is passed to the answer port of the select service and so to the output of the workflow. If the user clicks Cancel then a service failure is generated. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 18 times \| Downloaded: 18 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Select - message parameter (v1) Created: 27/09/08 @ 17:22:32 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The split_string_into_string_list_by_regular_expression parses the string 'a,b,c,d,e' and outputs the list ['a','b','c','d','e']. The select service displays a dialog with no title but with 'Some message'. The user is able to select from the values ['a','b','c','d',e']. When the user presses OK the value the user selected is passed to the answer port of the select service and so to the output of the workflow. If the user clicks Cancel then a service failure is generated. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 16 times \| Downloaded: 18 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Select - title and message parameters (v1) Created: 27/09/08 @ 17:23:04 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The split_string_into_string_list_by_regular_expression parses the string 'a,b,c,d,e' and outputs the list ['a','b','c','d','e']. The select service displays a dialog with ''Some title' and 'Some message'. The user is able to select from the values ['a','b','c','d',e']. When the user presses OK the value the user selected is passed to the answer port of the select service and so to the output of the workflow. If the user clicks Cancel then a service failure is generated. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 15 times \| Downloaded: 18 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Select - single element list (v1) Created: 27/09/08 @ 17:23:38 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The split_string_into_string_list_by_regular_expression parses the string 'a' and outputs the list ['a']. The select service displays a dialog with 'Some title' and 'Some message'. The user is only able to select the value 'a'. When the user presses OK 'a' is passed to the answer port of the select service and so to the output of the workflow. If the user clicks Cancel then a service failure is generated. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 18 times \| Downloaded: 20 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Split string into string list by regular expression - default regex (v1) Created: 27/09/08 @ 17:24:13 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The split string into string list by regular expression takes the string 'a,b,c' and using the default regular expression ',' splits it into the list ['a','b','c'] Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 20 times \| Downloaded: 21 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Split string into string list by regular expression - colon regex (v1) Created: 27/09/08 @ 17:24:44 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The split string into string list by regular expression takes the string 'boo:and:foo' and using the specified regular expression ':' splits it into the list ['boo','and','foo'] Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 22 times \| Downloaded: 24 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Split string into string list by regular expression - character regex (v1) Created: 27/09/08 @ 17:25:20 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The split string into string list by regular expression takes the string 'boo:and:foo' and using the specified regular expression 'o' splits it into the list ['b','',':and:f'] Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 17 times \| Downloaded: 29 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	String list difference - yielding non-empty list (v1) Created: 27/09/08 @ 17:25:57 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The string list difference service takes in ['a','b','c'] and ['a','e','c'] and returns the list ['b','e']. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 16 times \| Downloaded: 20 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	String list difference - yielding empty list (v1) Created: 27/09/08 @ 17:26:37 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The string list difference service takes in ['a','b','c'] and ['a','c','b'] and returns the empty list []. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 18 times \| Downloaded: 17 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	String list intersection - yielding non empty list (v1) Created: 27/09/08 @ 17:27:21 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The string list intersection service takes in ['a','b','c'] and ['a','e','c] and returns the list ['a','c']. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 16 times \| Downloaded: 18 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	String list intersection - yielding empty list (v1) Created: 27/09/08 @ 17:28:04 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The string list intersection service takes in ['a','b','c'] and ['x','y','z'] and returns the empty list []. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 15 times \| Downloaded: 18 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	String list union - yielding non-empty list (v1) Created: 27/09/08 @ 17:28:46 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The string list union service takes in ['a','b','c'] and ['a','e','c'] and returns a list equivalent to ['a','b','c','e']. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 20 times \| Downloaded: 18 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	String list union - yielding empty list (v1) Created: 27/09/08 @ 17:29:15 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The string list union service takes in two empty lists [] and [] and returns an empty list []. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 17 times \| Downloaded: 19 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Tell - no parameters (v1) Created: 27/09/08 @ 17:29:45 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The tell service displays an informative dialog with no title or message. When the user presses OK the string 'answer' is passed to the answer port of the tell service and so to the output of the workflow. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 14 times \| Downloaded: 17 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Tell - title parameter (v1) Created: 27/09/08 @ 17:30:13 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The tell service displays an informative dialog with 'Some title' but no message. When the user presses OK the string 'answer' is passed to the answer port of the tell service and so to the output of the workflow. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 15 times \| Downloaded: 19 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Tell - message parameter (v1) Created: 27/09/08 @ 17:30:42 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The tell service displays an informative dialog with no title but with message 'Some message'. When the user presses OK the string 'answer' is passed to the answer port of the tell service and so to the output of the workflow. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 17 times \| Downloaded: 18 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Tell - title and message parameters (v1) Created: 27/09/08 @ 17:31:37 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The tell service displays an informative dialog with no title but with message 'Some message'. When the user presses OK the string 'answer' is passed to the answer port of the tell service and so to the output of the workflow. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 20 times \| Downloaded: 18 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Test always fails - no parameters (v1) Created: 27/09/08 @ 17:32:53 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The test always fails service generates a service failure when no parameter values are supplied. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 16 times \| Downloaded: 21 times Tags (4): example \| expected-to-fail \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Test always fails - one parameter (v1) Created: 27/09/08 @ 17:33:33 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The test always fails service generates a service failure when one parameter value is supplied. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 14 times \| Downloaded: 20 times Tags (4): example \| expected-to-fail \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Test always fails - two parameters (v1) Created: 27/09/08 @ 17:34:09 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The test always fails service generates a service failure when two parameter values are supplied. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 14 times \| Downloaded: 23 times Tags (4): example \| expected-to-fail \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Transcribe DNA (v1) Created: 27/09/08 @ 17:34:40 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The Transcribe DNA service takes the DNA sequence, here defaulted to 'gatcctccat' and outputs the corresponding transcribed RNA sequence, in this example, 'gauccuccau'. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 31 times \| Downloaded: 21 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Transform XML - no output file (v1) Created: 27/09/08 @ 17:35:33 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The get_xml_file_from_web service downloads an example xml from myExperiment. The content of that file is then saved to a temporary file by create_and_populate_xml_file. The path to the temporary file is passed to the inFileURL port of Transform_XML. The get_xslt_file_from_web service downloads an example xslt file from myExperiment. The content of that file is then saved to a temporary file by create_and_populate_xslt_file. The path to the temporary file is passed to the xslFileURL port... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 39 times \| Downloaded: 27 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Transform XML - explicit output file (v1) Created: 27/09/08 @ 17:36:13 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The get_xml_file_from_web service downloads an example xml from myExperiment. The content of that file is then saved to a temporary file by create_and_populate_xml_file. The path to the temporary file is passed to the inFileURL port of Transform_XML. The get_xslt_file_from_web service downloads an example xslt file from myExperiment. The content of that file is then saved to a temporary file by create_and_populate_xslt_file. The path to the temporary file is passed to the xslFileURL port... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 46 times \| Downloaded: 35 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Transform XML - output file by extension (v1) Created: 27/09/08 @ 17:36:43 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The get_xml_file_from_web service downloads an example xml from myExperiment. The content of that file is then saved to a temporary file by create_and_populate_xml_file. The path to the temporary file is passed to the inFileURL port of Transform_XML. The get_xslt_file_from_web service downloads an example xslt file from myExperiment. The content of that file is then saved to a temporary file by create_and_populate_xslt_file. The path to the temporary file is passed to the xslFileURL port... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 34 times \| Downloaded: 22 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Warn - no parameters (v1) Created: 27/09/08 @ 17:37:28 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The warn service displays a prompt with no title or message. When the user presses OK the string 'answer' is passed to the answer port of the warn service and so to the output of the workflow. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 14 times \| Downloaded: 18 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Warn - title parameter (v1) Created: 27/09/08 @ 17:37:54 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The warn service displays a warning dialog with 'Some title' but no message. When the user presses OK the string 'answer' is passed to the answer port of the warn service and so to the output of the workflow. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 15 times \| Downloaded: 18 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Warn - message parameter (v1) Created: 27/09/08 @ 17:38:20 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The warn service displays a warning dialog with no title but message 'Some message'. When the user presses OK the string 'answer' is passed to the answer port of the warn service and so to the output of the workflow. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 14 times \| Downloaded: 18 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Warn - title and message parameters (v1) Created: 27/09/08 @ 17:38:47 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The warn service displays a warning dialog with 'Some title' and message 'Some message'. When the user presses OK the string 'answer' is passed to the answer port of the warn service and so to the output of the workflow. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 17 times \| Downloaded: 18 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Write text file - specified value (v1) Created: 27/09/08 @ 17:40:07 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The beanshell creates an empty temporary file. The filepath to the temporary file is then passed to the Write_text_file service which writes 'hello' into the file. 'hello' is also output by the service. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 27 times \| Downloaded: 25 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Write text file - empty string value (v1) Created: 27/09/08 @ 17:40:48 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The beanshell creates an empty temporary file. The filepath to the temporary file is then passed to the Write_text_file service which writes the empty string '' into the file. '' is also output by the service. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 19 times \| Downloaded: 19 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Write text file - overwriting content (v1) Created: 27/09/08 @ 17:41:23 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The beanshell creates an empty temporary file. The filepath to the temporary file is then passed to the Write_text_file A service which writes the string 'hello' into the file. After service A has run, service B writes 'goodbye' into the file. The file is then read by the Read_Text_File service and its content, 'goodbye', output by the workflow. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 41 times \| Downloaded: 29 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Echo_with_occasional_failure-1 (v1) Created: 29/09/08 @ 10:52:54 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The echo_with_occasional_failure service mostly echoes the string 'hello' to the out port. Sometimes, it throws a service failure. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 22 times \| Downloaded: 17 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Flatten list - two depth (v1) Created: 29/09/08 @ 11:46:16 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The flatten_list service takes the list [[['a']], [['b']], [['c']], [['d']]] and, using the default flatten depth of 2, outputs the list [['a'], ['b'], ['c'], ['d'], ['e']]. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 24 times \| Downloaded: 22 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Flatten list - three depth (v2) Created: 29/09/08 @ 11:47:05 \| Last updated: 30/09/08 @ 14:38:09 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The flatten_list service takes the list [[['a']], [['b']], [['c']], [['d']],[['e']]] and, using a flatten depth of 3, outputs the list ['a', 'b', 'c', 'd','e']. Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 41 times \| Downloaded: 31 times Tags (3): example \| localworker \| mygrid	View Download (v2)
Taverna 1 Original Uploader Alan Williams	Extract elements from a list - full extraction (v1) Created: 29/09/08 @ 13:27:21 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The extract_elements_from_a_list is passed the list ['a','b','c','d','e']. The fromIndex is 0 and the toIndex is 5, so the service outputs an identical list. Rating: 5.0 / 5 (1 rating) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 62 times \| Downloaded: 36 times Tags (5): example \| examples \| loacal worker \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Extract elements from a list - single element extraction (v1) Created: 29/09/08 @ 13:27:51 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The extract_elements_from_a_list is passed the list ['a','b','c','d','e']. The fromIndex is 2 and the toIndex is 3, so the service outputs the single element list ['c']. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 38 times \| Downloaded: 27 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Extract elements from a list - extraction in nested lists (v1) Created: 29/09/08 @ 13:28:23 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The extract_elements_from_a_list is passed the list [['a','b','c', 'd'], ['e','f','g','h'],['i','j','k','l'],['m','n','o','p']] with fromIndex of 1 and toIndex of 3 and the default depth of 1, will output the list [['b','c'], ['f','g'],['j','k'],['n','o'']] as it is the list with depth 1 e.g. ['e','f','g','h'] that are considered. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 28 times \| Downloaded: 20 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Alan Williams	Extract elements from a list - extraction of nested lists (v1) Created: 29/09/08 @ 13:28:49 Credits: Alan Williams License: Creative Commons Attribution 3.0 Unported License The extract_elements_from_a_list is passed the list [['a','b','c', 'd'], ['e','f','g','h'],['i','j','k','l'],['m','n','o','p']] with fromIndex of 1 and toIndex of 3 and depth 2, will output the list [['e','f','g','h'],['i','j','k','l']] as it is the outermost list i.e. that with depth 2 that is considered. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 47 times \| Downloaded: 22 times Tags (3): example \| localworker \| mygrid	View Download (v1)
Taverna 1 Original Uploader Wassinki	Analysing workflows (v3) Created: 06/05/09 @ 08:49:59 \| Last updated: 06/05/09 @ 08:50:29 Credits: Wassinki Pieter Neerincx Katy Wolstencroft Marco Roos License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflows analyses workflows stored at the myExperiment site. It is used in the paper submitted to the Workshop on Scientific Workflow 2009. The workflow shows the task usage in the Taverna workflows stored at the myExperiment site The amount of services used The amount of local processors used The amount of scripting tasks The amount of sub workflows Furthermore it classifies the local services based on their intended function. The workflow has two inputs: ... Rating: 0.0 / 5 (0 ratings) \| Versions: 3 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 145 times \| Downloaded: 57 times Tags (9): analysis \| beanshell \| localworker \| moby \| myexperiment \| rshell \| scripting \| taverna \| web services	View Download (v3)
Taverna 2 Original Uploader Alan Williams	Fetch today's xkcd comic (v1) Created: 12/07/11 @ 14:13:35 \| Last updated: 12/07/11 @ 14:13:36 Credits: Tomoinn Stian Soiland-Reyes Attributions: Fetch today's xkcd comic License: Creative Commons Attribution 3.0 Unported License Use the local services and some filtering operations to fetch the comic strip image from http://xkcd.com/ Based on the FetchDailyDilbert workflow. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 22 times \| Downloaded: 14 times Tags (4): example \| localworker \| taverna \| xkcd	View Download (v1)

Packs (1)

Creator:

Alan Williams

Taverna localworker example pack

Created: 27/09/08 @ 17:57:39 | Last updated: 29/09/08 @ 13:30:24

A pack of examples of the calling of Taverna's localworkers. The example workflows make extensive use of the default value mechanism for associating a value with a port of a service. An alternative set of workflows that use string constants to make the values more explicit is under development.

103 items in this pack

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