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User: Andrew David King
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Name: Andrew David King Joined: Wednesday 10 March 2010 @ 18:35:49 (GMT) Last seen: Monday 06 February 2012 @ 19:16:48 (GMT) Email (public): Not specified Website: http://www.adking.co.uk Location: Newcastle upon Tyne, United Kingdom |
Andrew David King has been credited 0 times Andrew David King has an average rating of: 0.0 / 5 (0 ratings in total) for their items |
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Created: 29/09/08 @ 12:13:41 | Last updated: 29/09/08 @ 12:29:01
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
Converts external IDs to KEGG IDs.External database: NCBI GI, NCBI GeneID, GenBank , UniGene , OMIM. Database prefix: ncbi-gi:, ncbi-geneid:, genbank: ,unigene: , uniprot: , omim:
Example of input parameter:
ncbi-gi:10047090
ncbi-geneid:14751
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Created: 12/07/08 @ 10:13:37 | Last updated: 12/07/08 @ 10:13:50
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
A list of Kegg entires are supplied to the Kegg database which then retrieves the associated metabolic pathways for each entry supplied. e.g. Ids takes in a value of 351, whilst abbr takes in a value of hsa. Thus hsa:351 corresponds to neurodegenerative disorders and alzheimers disease pathways. [fisherp@cs.man.ac.uk]
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Created: 30/07/08 @ 16:36:55 | Last updated: 03/12/09 @ 16:54:02
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
Retrieves a protein sequence in Fasta format from GenBank, given a GenBank identifier.
Example input for this workflow is:
EDL10223.1
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Created: 27/09/08 @ 17:16:45
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License: Creative Commons Attribution 3.0 Unported License
The Get_web_page_from_URL downloads a file from myExperiment that contains GenBank data. That data is then saved to a temporary file generated by the create_and_populate_temporary_file beanshell. The path to the temporary file is then passed to the Read_GenBank_file service. That service reads the file and converts the GenBank data into Agave format. The result is then sent to the workflow's out port.
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Created: 04/12/09 @ 16:04:38 | Last updated: 30/11/10 @ 12:18:53
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License: Creative Commons Attribution 3.0 Unported License
This workflow takes in Entrez gene ids then adds the string "ncbi-geneid:" to the start of each gene id. These gene ids are then cross-referenced to KEGG gene ids. Each KEGG gene id is then sent to the KEGG pathway database and its relevant pathways returned.
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Created: 10/03/10 @ 17:15:47 | Last updated: 10/03/10 @ 17:18:47
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow gets a series of information relating to a list of KEGG pathways supplied to it. It also removes any null values from a list of strings. Example input: path:mmu04010 path:mmu05014
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