Version 3 (latest)
(of 3)
|
Version created on:
26/10/08 @ 20:33:34
by:
Hamish McWilliam
|
Revision comments
Last edited on: 01/04/11 @ 08:52:28 by: Hamish McWilliam
Title: EBI_InterProScan
Type: Taverna 1
Preview
(Click on the image to get the full size)
Description
Note: the WSInterProScan web service used by this workflow is no longer available haveing been replaced by the EMBL-EBI's InterProScan (REST) (http://www.ebi.ac.uk/Tools/webservices/services/pfa/iprscan_rest) and InterProScan (SOAP) (http://www.ebi.ac.uk/Tools/webservices/services/pfa/iprscan_soap) web services. Thus the workflow described here no longer works, see the alternative workflows for the InterProScan (SOAP) service for workflows which use the new services.
Perform an InterProScan analysis of a protein sequence using the EBI’s WSInterProScan service (see http://www.ebi.ac.uk/Tools/webservices/services/interproscan). The input sequence to use and the user e-mail address are inputs, the other parameters for the analysis (see Job_params) are allowed to default. InterProScan searches a protein sequence against the protein family and domain signature databases integrated into InterPro (see http://www.ebi.ac.uk/interpro/). A set of matches to the signatures are returned, which are annotated with the corresponding InterPro and GO term assignments for these signature matches.
Download
Run
Option 1:
Note: you need to have both the WHIP Launcher and the Taverna myExperiment/WHIP plugin installed on your machine for this to work. See here for information.
Option 2:
Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/204/download?version=3
[ More Info
]
Workflow Components
Workflow Type
Log in to add Tags
Shared with Groups (0)
None
Current:
0.0 / 5
(0 ratings)
Log in to rate and see breakdown of ratings
Statistics
None
Earliest Version:
[1] - EBI_InterProScan
Previous Versions:
[2] - EBI_InterProScan
Latest Version:
[3] - EBI_InterProScan
Reviews
(0)
Other workflows that use similar services
(17)
Only the first 2 workflows that use similar services are shown. View all workflows that use these services.
|
Original Uploader |
Created: 26/01/10 @ 14:46:07 | Last updated: 26/01/10 @ 14:46:08
Credits:
Attributions:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
Perform an InterProScan analysis of a protein sequence using the EBI’s WSInterProScan service (see http://www.ebi.ac.uk/Tools/webservices/services/interproscan). The input sequence to use and the user e-mail address are inputs, the other parameters for the analysis (see Job_params) are allowed to default.
InterProScan searches a protein sequence against the protein family and domain signature databases integrated into InterPro (see http://www.ebi.ac.uk/interpro/). A set of matches to the sig...
Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 162 times | Downloaded: 118 times Tags (5): |
View
Download (v2)
|
|
Original Uploader |
Created: 16/11/09 @ 12:37:25
Credits:
Attributions:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
Ex of exercise
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 39 times | Downloaded: 0 times Tags (3): |
View
|
Linked Data
Non-Information Resource URI: http://www.myexperiment.org/workflows/204
Alternative Formats
Copyright © 2007 - 2011 The University of Manchester and University of Southampton
Log in to make a comment
Service " Get_XML_result" doesn't seem to run as a result I was unable to load the workfow in Taverna.