Workflow Entry: EBI_InterProScan

Created at: 26/10/08 @ 20:33:34      Last updated: 01/04/11 @ 08:52:28
Information Version 2 (of 3)
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Version created on: 31/05/08 @ 11:38:57 by: Hamish McWilliam   |   Revision comment Expand

Last edited on: 25/06/08 @ 06:30:59 by: Hamish McWilliam

Title: EBI_InterProScan

Type: Taverna 1


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Information Description

Perform an InterProScan analysis of a protein sequence using the EBI’s WSInterProScan service (see http://www.ebi.ac.uk/Tools/webservices/services/interproscan). The input sequence to use and the user e-mail address are inputs, the other parameters for the analysis (see Job_params) are allowed to default.

InterProScan searches a protein sequence against the protein family and domain signature databases integrated into InterPro (see http://www.ebi.ac.uk/interpro/). A set of matches to the signatures are returned, which are annotated with the corresponding InterPro and GO term assignments for these signature matches.


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Information Workflow Components

Inputs (2)
Processors (10)
Beanshells (2)
Outputs (4)
Links (15)
Coordinations (2)

Information Workflow Type

Taverna 1

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  • Monday 22 September 2008 @ 16:55:20 (UTC)

    Service " Get_XML_result" doesn't seem to run as a result I was unable to load the workfow in Taverna.




Workflow Other workflows that use similar services (17)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.


Original Uploader

Workflow EBI InterProScan (2)

Created: 03/10/07 @ 18:35:46

License: Creative Commons Attribution-No Derivative Works 3.0 Unported License

Thumb
EBI InterProScan. Stop fannying around with BLAST and use InterProScan instead.

Rating: 4.0 / 5 (2 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 763 times | Downloaded: 198 times

Tags (4):

Original Uploader

Workflow EBI_InterProScan_with_prompts (1)

Created: 31/05/08 @ 11:40:34 | Last updated: 01/04/11 @ 08:57:45

Credits: User Hamish McWilliam

Attributions: Workflow EBI_InterProScan

License: Creative Commons Attribution 3.0 Unported License

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Note: the WSInterProScan web service used by this workflow is no longer available haveing been replaced by the EMBL-EBI's InterProScan (REST) (http://www.ebi.ac.uk/Tools/webservices/services/pfa/iprscan_rest) and InterProScan (SOAP) (http://www.ebi.ac.uk/Tools/webservices/services/pfa/iprscan_soap) web services. Thus the workflow described here no longer works, see the alternative workflows for the InterProScan (SOAP) service for workflows which use the new services. Run an InterProScan anal...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 119 times | Downloaded: 77 times

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Non-Information Resource URI: http://www.myexperiment.org/workflows/204/versions/2


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