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InviteWorkflow Entry: BLASTP with simplified results returned
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 Version 2 (latest)
(of 2)
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Version created on:
03/10/07 @ 18:36:06
by:
Paul Fisher
|
Revision comments 
Last edited on: 03/12/09 @ 16:28:51 by: Paul Fisher
Title: BLASTP with simplified results returned
Type: Taverna 1
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Description
Perform a blastp search on protein sequence and extract information based on the user input, e.g. a list of GI numbers. N.B. this workflow does not function correctly as it is designed for use with NCBI blast scripts. Some errors may occur. Please use two blast text file inputs for a secure result output.
Example input for this service are given below.
query:
>MySequence
MATDDSIIVLDDDDEDEAAAQPGPSNLPPNPASTGPGPGLSQQATGLSEPRVDGGSS
NSGSRKCYKLDNEKLFEEFLELCKTETSDHPEVVPFLHKLQQRAQSVFLASAEFCNIL
SRVLARSRKRPAKIYVYINELCTVLKAHSIKKKLNLAPAASTTSEASGPNPPTEPPSDLT
NTENTASEASRTRGSRRQIQRLEQLLALYVAEIRRLQEKELDLSELDDPDSSYLQEAR
LKRKLIRLFGRLCELKDCSSLTGRVIEQRIPYRGTRYPEVNRRIERLINKPGLDTFPDY
GDVLRAVEKAATRHSLGLPRQQLQLLAQDAFRDVGVRLQERRHLDLIYNFGCHLTDD
YRPGVDPALSDPTLARRLRENRTLAMNRLDEVISKYAMMQDKTEEGERQKRRARLLG
TAPQPSDPPKASSESGEGPSGMASQECPTTSKAETDDDDDDDDDDDDEDNEESEE
EEEEEEEEKEATEDEDEDLEQLQEDQGGDEEEEGGDNEGNESPTSPSDFFHRRNS
EPAEGLRTPEGQQKRGLTETPASPPGASLDPPSTDAESSGEQLLEPLLGDESPVSQL
AELEMEALPEERDISSSRKKSEDSLPTILENGAAVVTSTSVNGRVSSHTWRDASPPSK
RFRKEKKQLGSGLLGNSYIKEPMAQQDSGQNTSVQPMPSPPLASVASVADSSTRVDS
PSHELVTSSLCSPSPSLLLQTPQAQSLRQCIYKTSVATQCDPEEIIVLSDSD
program:
blastp
database: DDBJ
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Option 1:
Launch in TavernaNote: you need to have both the WHIP Launcher and the Taverna myExperiment/WHIP plugin installed on your machine for this to work. See here for information.
Option 2:
Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/21/download?version=2
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Earliest Version:
[1] - BLASTP with simplified results returned
Latest Version:
[2] - BLASTP with simplified results returned
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Non-Information Resource URI: http://www.myexperiment.org/workflows/21
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