Workflows

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Showing 1572 results. Use the filters on the left and the search box below to refine the results.
Type: Taverna 2

Workflow MrBayesPPtest (13)

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robust connection

Created: 2013-12-11 | Last updated: 2014-11-27

Workflow ConsensusTree (15)

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robust interaction

Created: 2013-12-11 | Last updated: 2014-11-27

Workflow ConVergenceTreeDiagnosticGeoKS (15)

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robust interaction

Created: 2013-12-11 | Last updated: 2014-11-27

Workflow G-language Genome Analysis Environment - R... (2)

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This workflow displays a documentation of G-language GAE programs. If you input the "keywords", this workflow searches for the keyword through the documentations. See http://www.g-language.org/ for more information about the G-language Genome Analysis Environment.

Created: 2010-03-30 | Last updated: 2010-03-30

Credits: User cory (Kazuki Oshita)

Workflow microRNA to KEGG Pathways and Abstracts (1)

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Workflow takes in a text file of microRNAs from microCOSM (at the EBI) and outputs a list of KEGG pathway information, including genes in pathways and pathway abstracts from PubMed. The results can then be used in various text mining applications/workflows to rank the results against a given disease.Workflow takes in a file of microRNAs

Created: 2010-03-17

Credits: User Paul Fisher

Attributions: Workflow Pathways and Gene annotations for QTL region

Workflow Sentence splitting (1)

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This workflow will attempt to split up text into sentences, returning a list of sentences to the output port.  The sentence splitting service makes use of the OpenNLP sentence detector and has been trained to work on english text. This workflow can be used to provide input to the Termine with c-value threshold workflow. This is a workflow component, designed to be used as a nested workflow inside a larger text mining or text processing workflow.

Created: 2010-02-19 | Last updated: 2011-12-13

Credits: User James Eales

Workflow DataBiNS with Kegg ID (3)

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Consumes a KEGG gene id and mines for pathway, GO, PubMed and SNP information about that gene

Created: 2009-07-09 | Last updated: 2010-11-22

Credits: User Mark Wilkinson User Fong Chun Chan

Workflow A workflow version of the EMBOSS tutorial (1)

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Designed to show the use of EMBOSS based Soaplab services from Taverna, this workflow has no inputs as all initial values are specified as string constants. A sequence set is fetched using the seqret tool, then simultaneously scanned for predicted transmembrane regions and subjected to a multiple alignment using emma. This alignment is then plotted to a set of PNG images and also used to build a profile using the prophecy and prophet tools.

Created: 2009-07-03 | Last updated: 2009-07-03

Credits: User Stian Soiland-Reyes

Attributions: Workflow A workflow version of the EMBOSS tutorial

Workflow Fetch today's xkcd comic (1)

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Use the local java plugins and some filtering operations to fetch the comic strip image from http://xkcd.com/ Based on the FetchDailyDilbert workflow.

Created: 2009-07-03

Credits: User Stian Soiland-Reyes

Attributions: Workflow Fetch today's xkcd comic

Workflow Biomart and EMBOSS analysis (1)

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Using Biomart and EMBOSS soaplab services, This workflow retrieves a number of sequences from 3 species: mouse, human, rat; align them, and returns a plot of the alignment result. Corresponding sequence ids are also returned.

Created: 2009-07-03 | Last updated: 2009-07-03

Credits: User Stian Soiland-Reyes

Attributions: Workflow BiomartAndEMBOSSAnalysis

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