Pack: Taverna localworker example pack

Created: 2008-09-27 17:57:39      Last updated: 2012-03-05 11:33:29
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Title: Taverna localworker example pack


Information Description

A pack of examples of the calling of Taverna's localworkers.

The example workflows make extensive use of the default value mechanism for associating a value with a port of a service.  An alternative set of workflows that use string constants to make the values more explicit is under development.

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    Workflow: Ask - just message parameter (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:21:19)

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    Workflow: Ask - just title parameter (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:21:34)

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    Workflow: Ask - no parameters (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:21:50)

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    Workflow: Ask - title and message parameters (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:21:02)

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    Workflow: Byte[] to string - empty value (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:20:30)

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    Workflow: Byte[] to string - non empty value (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:20:46)

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    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:19:37)

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    Workflow: Choose - no title or message parameters (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:20:13)

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    Workflow: Choose - single element list (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:19:07)

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    Workflow: Choose - title and message parameters (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:19:22)

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    Workflow: Choose - title parameter (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:19:54)

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    Workflow: Concatenate files - echo results and multiple files (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:18:53)

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    Workflow: Concatenate files - echo results but no files (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:18:35)

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    Workflow: Concatenate files - multiple files (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:18:17)

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    Workflow: Concatenate two strings (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:17:49)

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    Workflow: Concatenate two strings - empty strings (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:17:33)

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    Workflow: Create lots of strings (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:17:16)

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    Workflow: Decode base64 to byte[] (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:16:32)

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    Workflow: Echo_with_occasional_failure-1 (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-29 10:53:36)

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    Workflow: Encode byte[] to base64 (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:16:16)

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    File: Example Genbank data (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 17:58:25)

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    File: Example SwissProt Data (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 17:58:13)

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    File: Example XML file (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 17:58:05)

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    File: Example XSLT file (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 17:57:56)

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    Workflow: Execute cmd line app - unix - /bin/ls -R of temporary directory (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:15:39)

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    Workflow: Execute cmd line app - unix - /bin/ls of temporary directory (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:15:56)

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    Workflow: Extract elements from a list - extraction in nested lists (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-29 13:29:49)

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    Workflow: Extract elements from a list - extraction of nested lists (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-29 13:29:31)

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    Workflow: Extract elements from a list - full extraction (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-29 13:30:24)

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    Workflow: Extract elements from a list - single element extraction (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-29 13:30:07)

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    Workflow: Fail if false - false value (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:15:20)

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    Workflow: Fail if false - non false value (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:14:47)

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    Workflow: Fail if false - true value (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:15:02)

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    Workflow: Fail if true - false value (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:14:15)

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    Workflow: Fail if true - non true value (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:14:02)

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    Workflow: Fail if true - true value (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:14:32)

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    Workflow: FIlter list of strings by regex extracting the specified group in the matches (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:13:18)

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    Workflow: FIlter list of strings by regex extracting the specified group in the matches (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:12:38)

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    Workflow: FIlter list of strings by regex extracting the specified group in the matches (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:13:04)

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    Workflow: FIlter list of strings by regex with a suitable regular expression (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:13:48)

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    Workflow: FIlter list of strings by regex with an unsuitable regular expression (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:13:33)

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    Workflow: Flatten list - three depth (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-29 11:48:13)

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    Workflow: Flatten list - two depth (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-29 11:48:27)

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    Workflow: Get image from URL - only url specified (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:12:23)

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    Workflow: Get image from URL - url and base specified (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:12:09)

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    Workflow: Get image URLs from HTML document and output the results (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:11:37)

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    Workflow: Get image URLs from HTTP document (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:11:52)

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    Workflow: Get web page from URL - just url (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:11:14)

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    Workflow: Get web page from URL - url and base (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:10:59)

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    Workflow: List files by extension - empty directory (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:10:00)

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    Workflow: List files by extension - no answer (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:10:16)

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    Workflow: List files by extension - several answers (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:10:44)

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    Workflow: List files by extension - single answer (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:10:28)

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    Workflow: List files by regex - empty directory (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:09:00)

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    Workflow: List files by regex - no answer (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:09:14)

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    Workflow: List files by regex - several answers (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:09:46)

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    Workflow: List files by regex - single answer (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:09:27)

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    Workflow: Merge string list to string - colon separator (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:08:30)

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    Workflow: Merge string list to string - default separator (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:08:44)

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    Workflow: Merge string list to string - empty list (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:08:16)

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    Workflow: Pad numeral with leading 0s - default targetlength (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:08:01)

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    Workflow: Pad numeral with leading 0s - specified targetlength (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:07:47)

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    Workflow: Pad numeral with leading 0s - too short targetlength (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:07:32)

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    Workflow: Read GenBank file (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:07:17)

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    Workflow: Read SwissProt file (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:07:04)

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    Workflow: Read text file (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:06:52)

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    Workflow: Read text file - empty file (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:06:27)

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    Workflow: Read text file - several lines (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:06:39)

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    Workflow: Remove duplicate strings (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:06:12)

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    Workflow: Remove duplicate strings - empty list (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:05:59)

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    Workflow: Reverse complement DNA (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:05:44)

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    Workflow: Select - message parameter (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:05:02)

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    Workflow: Select - no title or message parameters (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:05:29)

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    Workflow: Select - single element list (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:04:34)

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    Workflow: Select - title and message parameters (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:04:48)

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    Workflow: Select - title parameter (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:05:16)

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    Workflow: Split string into string list by regular expression - character regex (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:03:44)

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    Workflow: Split string into string list by regular expression - colon regex (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:04:05)

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    Workflow: Split string into string list by regular expression - default regex (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:04:19)

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    Workflow: String list difference - yielding empty list (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:03:18)

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    Workflow: String list difference - yielding non-empty list (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:03:31)

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    Workflow: String list intersection - yielding empty list (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:02:53)

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    Workflow: String list intersection - yielding non empty list (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:03:04)

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    Workflow: String list union - yielding empty list (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:02:29)

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    Workflow: String list union - yielding non-empty list (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:02:41)

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    Workflow: Tell - message parameter (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:01:53)

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    Workflow: Tell - no parameters (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:02:15)

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    Workflow: Tell - title and message parameters (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:01:41)

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    Workflow: Tell - title parameter (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:02:05)

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    Workflow: Test always fails - no parameters (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:01:27)

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    Workflow: Test always fails - one parameter (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:01:18)

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    Workflow: Test always fails - two parameters (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:01:07)

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    Workflow: Transcribe DNA (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:00:57)

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    Workflow: Transform XML - explicit output file (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:00:37)

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    Workflow: Transform XML - no output file (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:00:47)

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    Workflow: Transform XML - output file by extension (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:00:28)

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    Workflow: Warn - message parameter (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 17:59:55)

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    Workflow: Warn - no parameters (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:00:15)

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    Workflow: Warn - title and message parameters (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 17:59:46)

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    Workflow: Warn - title parameter (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 18:00:06)

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    Workflow: Write text file - empty string value (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 17:59:23)

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    Workflow: Write text file - overwriting content (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 17:59:14)

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    Workflow: Write text file - specified value (Alan Williams)

    Added by Alan Williams ... more than 1 year ago (2008-09-27 17:59:32)

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