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Pack Core text mining workflows


Created: 2010-02-19 10:12:33 | Last updated: 2011-12-13 16:03:17

This pack contains workflows we have created to support core text mining tasks. We currently provide workflows to do these tasks Loading documents (text or PDF) PDF to text conversion Sentence splitting Text cleaning (ASCII or XML-valid) Term recognition (using NaCTeM service TerMine)  

7 items in this pack

Comments: 0 | Viewed: 687 times | Downloaded: 124 times

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Pack useful_for_sysmo


Created: 2008-12-17 12:31:48 | Last updated: 2009-06-10 09:43:20

These workflows have been collected as potentially useful protocols for the sysmo consortium

21 items in this pack

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Pack Taverna 2.3 starter pack


Created: 2011-06-21 14:16:18 | Last updated: 2012-04-05 13:55:40

The Taverna team are pleased to announce that Taverna 2.3.0 Workbench and the Command Line Tool are now available for download. Taverna 2.3.0 includes new service types, integration with service catalogues and experimental export of provenance information. Here are a few of the new features in the Workbench: REST service allowing you to perform GET, POST, PUT and DELETE operations configured using a template XPath service where you can create an XPath expression from an example...

26 items in this pack

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Pack Trident Example Workflows


Created: 2008-10-08 13:33:38 | Last updated: 2008-10-22 12:45:31

A set of example workflows for the Microsoft Trident workflow system

9 items in this pack

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Pack Open Data: Bilateral Perisylvian Polymicrogyria


Created: 2010-11-16 16:20:43 | Last updated: 2011-09-23 10:55:08

This pack contains freely accessible data for scientific researchers to try and identify key genes linked to Bilateral Perisylvian Polymicrogyria. For those who want more information about this condition before they download the data, please see this link, which describes the condition and traits: http://omim.org/entry/300388?search=bilateral%20perisylvian%20polymicrogyria The results conatined within this pack are the output from running a scientific workflow that identifies candidate genes...

7 items in this pack

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Pack WikiPathways workflows


Created: 2008-09-16 11:43:57 | Last updated: 2009-02-03 12:47:00

A set of workflows that use the WikiPathways webservice.

5 items in this pack

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Project Biovel

Pack DEPRECATED - Matrix Population Models construction a...


Created: 2012-11-02 10:48:48 | Last updated: 2014-09-17 10:44:21

This pack is deprecated. To obtain a more recent version of this pack, please refer to: http://www.myexperiment.org/packs/483.html The Matrix Population Models Workflow provides an environment to create a stage-matrix with no density dependence and to perform several analyses on it:- Eigen analysis;- Age specific survival;- Generation time (T);- Net reproductive rate (Ro);- Transient Dynamics;- Bootstrap of observed census transitions (Confidence intervals of λ).This workflow has ...

4 items in this pack

Comments: 1 | Viewed: 159 times | Downloaded: 37 times

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Pack acetanilide comparison study (test)


Created: 2008-08-18 17:58:31 | Last updated: 2008-08-18 18:11:21

Links to repository records, data files and Blog discussions for infra-red, hot stage microscopy, differential scanning calorimetry and x-ray crystallography studies on a small family of simple acetanilides

7 items in this pack

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Pack Pathway to Phenotype using Text Mining


Created: 2009-08-10 13:01:47 | Last updated: 2009-08-11 14:51:31

This pack contains a list of workflows and result files obtained from the analysis of candidate pathways believed to play a role in resistance to African Trypanosomiasis in the mouse model organism.

12 items in this pack

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Pack Towards Genotype-Phenotype Correlations


Created: 2009-04-08 13:14:54 | Last updated: 2009-08-11 14:50:01

It is increasingly common to combine Microarray and Quantitative Trait Loci data to aid the search for candidate genes responsible for phenotypic variation. Workflows provide a means of systematically processing large datasets, and represent a framework for the re-use and the explicit declaration of experimental methods. In this pack is a paper which describes the issues facing the manual analysis of microarray and QTL data for the discovery of candidate genes underlying complex phenotypes.&n...

20 items in this pack

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