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Items tagged with "graph" (42)

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Workflows (39)

Taverna 1 Original Uploader Paul Fisher	Get Concepts (v1) Created: 27/02/09 @ 16:33:39 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow gets all the concepts in an Ondex graph, using a given graph id Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 65 times \| Downloaded: 21 times Tags (3): data integration \| graph \| ondex	View Download (v1)
Taverna 1 Original Uploader Paul Fisher	Get CVs (v1) Created: 27/02/09 @ 16:38:39 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow lets users retrive all controlled vocabularies for a given Ondex graph Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 23 times \| Downloaded: 17 times Tags (3): data integration \| graph \| ondex	View Download (v1)
Taverna 1 Original Uploader Paul Fisher	Get Evidence Types (v1) Created: 27/02/09 @ 16:40:22 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow gets all the evidence types within a specified Ondex graph Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 22 times \| Downloaded: 15 times Tags (3): data integration \| graph \| ondex	View Download (v1)
Taverna 1 Original Uploader Paul Fisher	Get graphs (v2) Created: 05/11/09 @ 12:38:22 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License Thiw workflow simply returns all the Ondex graphs that are present on a given server (where the web service is) Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 41 times \| Downloaded: 20 times Tags (3): data integration \| graph \| ondex	View Download (v2)
Taverna 1 Original Uploader Paul Fisher	Get Graphs of Name (v1) Created: 27/02/09 @ 16:42:35 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow gets the Ondex graphs relating to a specified name Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 17 times \| Downloaded: 13 times Tags (3): data integration \| graph \| ondex	View Download (v1)
Taverna 1 Original Uploader Paul Fisher	Get relations (v1) Created: 27/02/09 @ 16:45:39 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow gets all the realtions from a given Ondex graph Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 14 times \| Downloaded: 13 times Tags (3): data integration \| graph \| ondex	View Download (v1)
Taverna 1 Original Uploader Paul Fisher	All Pairs Filter (v1) Created: 19/08/09 @ 16:06:29 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow filters a given Ondex graph based on the occurrence of directed edges within the graph. Only those concepts that have directional edges are returned to the user, in the form of a new graph. The parameters that can be used with this service are as follows: graphId - the ID of the input Graph. outputGraphId - the ID of the output Graph. Optional parameter. If no output graph is specified filtered items will be removed from the input graph. GdsWeight - The name of the GDS type to ... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 11 times \| Downloaded: 1 time Tags (5): filter \| graph \| ondex \| ovtk \| oxl	View
Taverna 1 Original Uploader Paul Fisher	Clean GO Filter (v1) Created: 19/08/09 @ 16:07:27 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow filters an Ondex graph, by cleaning up any GO terms within the Graph (?). The result is a new Ondex graph. The parameters that can be used with this service are as follows: graphId - the ID of the input Graph. outputGraphId - the ID of the output Graph (Optional). If no output graph is specified filtered items will be removed from the input graph. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 24 times \| Downloaded: 1 time Tags (8): filter \| GO \| go terms \| graph \| ondex \| ovtk \| oxl \| terms	View
Taverna 1 Original Uploader Paul Fisher	Clean UniProt Filter (v1) Created: 19/08/09 @ 16:08:48 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow filters a given Ondex graph, removing any erroneous UniProt data. The result is a new Ondex graph that conatains only connected UniProt data. The parameters that can be used with this service are as follows: graphId - the ID of the input Graph. outputGraphId - the ID of the output Graph. Optional parameter. If no output graph is specified filtered items will be removed from the input graph. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 13 times \| Downloaded: 1 time Tags (6): filter \| graph \| ondex \| ovtk \| oxl \| uniprot	View
Taverna 1 Original Uploader Paul Fisher	Concept Class Filter (v1) Created: 19/08/09 @ 16:10:36 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow filters a Ondex graph based on a specific concept class. The result is a new Ondex graph. The parameters that can be used with this service are as follows: graphId - the ID of the input Graph. outputGraphId - the ID of the output Graph (Optional). If no output graph is specified filtered items will be removed from the input graph. TargetConceptClass - Target Concept Class to filter out. RefactorTrinaries - Where the qualifier of a trinary relation is out of scope create a bina... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 10 times \| Downloaded: 1 time Tags (6): concept \| filter \| graph \| ondex \| ovtk \| oxl	View
Taverna 1 Original Uploader Paul Fisher	Concept Class Neighbours Filter (v1) Created: 19/08/09 @ 16:11:56 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow filters a given Ondex graph based on a user defined concept class. The neighbours of the concept class are returned as a new Ondex graph. The parameters that can be used with this service are as follows: graphId - the ID of the input Graph. outputGraphId - the ID of the output Graph (Optional). If no output graph is specified filtered items will be removed from the input graph. Depth - The Depth (distance from seed in relations) to apply the filter to. ConceptClass - The Conce... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 11 times \| Downloaded: 1 time Tags (7): concept \| distance \| filter \| graph \| ondex \| ovtk \| oxl	View
Taverna 1 Original Uploader Paul Fisher	Context Consensus Filter (v1) Created: 19/08/09 @ 16:13:11 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow filters a given Ondex graph according to a consensus with regards to a specific context (concept list). The result is a new Ondex graph. The parameters that can be used with this service are as follows: graphId - the ID of the input Graph. outputGraphId - the ID of the output Graph. Optional parameter. If no output graph is specified filtered items will be removed from the input graph. Threshold - Double value representing the share of contexts that qualify a graph element for ... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 11 times \| Downloaded: 1 time Tags (7): concept \| consensus \| filter \| graph \| ondex \| ovtk \| oxl	View
Taverna 1 Original Uploader Paul Fisher	Context Filter (v1) Created: 19/08/09 @ 16:14:13 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow filters an Ondex graph according to a given context. The result is a new Ondex graph with only selected contexts. The parameters that can be used with this service are as follows: graphId - the ID of the input Graph. outputGraphId - the ID of the output Graph (Optional). If no output graph is specified filtered items will be removed from the input graph. ContextID - The Concept ID of the Context that starts the path. ContextBoolean - Defines two ContextIDs and a boolean operati... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 16 times \| Downloaded: 1 time Tags (6): context \| filter \| graph \| ondex \| ovtk \| oxl	View
Taverna 1 Original Uploader Paul Fisher	CV Filter (v1) Created: 19/08/09 @ 16:15:20 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow filters a given Ondex graph according to a controlled vocabulary specified by the user. The result is a new Ondex graph with only those concepts that passed the filter. The parameters that can be used with this service graphId - the ID of the input Graph. outputGraphId - the ID of the output Graph. Optional parameter. If no output graph is specified filtered items will be removed from the input graph. CV - A CV to include/exclude Concepts and Relations of (see Exclude param). R... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 25 times \| Downloaded: 1 time Tags (7): controlled vocabulary \| cv \| filter \| graph \| ondex \| ovtk \| oxl	View
Taverna 1 Original Uploader Paul Fisher	Evidence Type Filter (v1) Created: 19/08/09 @ 16:16:15 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow filters a given Ondex graph according to some user defined evidence values. The result is a new Ondex graph. The parameters that can be used with this web service are given below: graphId - the ID of the input Graph. outputGraphId - the ID of the output Graph. Optional parameter. If no output graph is specified filtered items will be removed from the input graph. EvidenceType - EvidenceType to be taken into consideration. RefactorTrinaries - Where the qualifier of a trinary rel... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 8 times \| Downloaded: 1 time Tags (6): evidence \| filter \| graph \| ondex \| ovtk \| oxl	View
Taverna 1 Original Uploader Paul Fisher	GDS Value Filter (v1) Created: 19/08/09 @ 16:17:27 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow filters a given Ondex graph based on a given GDS value supplied by the user. The result is a new Ondex graph with filtered content. The parameters that can be used with this service are as follows: graphId - the ID of the input Graph. outputGraphId - the ID of the output Graph. Optional parameter. If no output graph is specified filtered items will be removed from the input graph. AttributeName - AttributeName to filter out. GDSValue - A value which will be matched against the ... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 13 times \| Downloaded: 1 time Tags (8): comparison \| filter \| gds \| general data store \| graph \| ondex \| ovtk \| oxl	View
Taverna 1 Original Uploader Paul Fisher	Genomic Filter (v1) Created: 19/08/09 @ 16:19:01 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow filters a given Ondex graph according to a chromosomal region, or QTL region. The result is a new Ondex graph. The parameters that can be used with this service are as follows: graphId - the ID of the input Graph. outputGraphId - the ID of the output Graph (Optional). If no output graph is specified filtered items will be removed from the input graph. ContextID - The Concept ID of the Context (Chromosome). From - The start position on the chromosome, e.g. 100. To - The stop pos... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 22 times \| Downloaded: 1 time Tags (12): chromosome \| filter \| genomic \| graph \| loci \| ondex \| ovtk \| oxl \| qtl \| quanitative \| region \| triat	View
Taverna 1 Original Uploader Paul Fisher	Graph Cloner (v1) Created: 19/08/09 @ 16:22:13 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow clones a given Ondex Graph, based on an Ondex Graph identifier. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 14 times \| Downloaded: 1 time Tags (6): cloner \| filter \| graph \| ondex \| ovtk \| oxl	View
Taverna 1 Original Uploader Paul Fisher	Isolate Clusters Filter (v1) Created: 19/08/09 @ 16:23:45 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow filters a given Ondex graph, isolating clusters within the graph and returning only those clusters as a new graph. The parameters that can be used with this service are as follows: graphId - the ID of the input Graph. outputGraphId - the ID of the output Graph (Optional). If no output graph is specified filtered items will be removed from the input graph. TargetConceptClass - Target Concept Class to be contained in clusters. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 11 times \| Downloaded: 1 time Tags (7): clusters \| filter \| graph \| isolate \| ondex \| ovtk \| oxl	View
Taverna 1 Original Uploader Paul Fisher	One Pair Shortest Path Filter (v1) Created: 19/08/09 @ 16:24:41 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow filters a pre-existing Ondex graph using the shortest path algorithm on the graph. The result is a new Ondex graph. The parameters that can be used with this service are as follows: graphId - the ID of the input Graph. outputGraphId - the ID of the output Graph. Optional parameter. If no output graph is specified filtered items will be removed from the input graph. StartConceptID - The Concept ID that starts the path EndConceptID - The Concept ID that ends the path UseWeights -... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 10 times \| Downloaded: 1 time Tags (7): filter \| gds \| graph \| ondex \| ovtk \| oxl \| shortest path	View
Taverna 1 Original Uploader Paul Fisher	Optimal Paths Filter (v1) Created: 19/08/09 @ 16:25:49 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow filters a given Ondex graph based on the optimal path between one or more concepts. The result is a new Ondex graph. The parameters that can be used with service are as follows: graphId - the ID of the input Graph. outputGraphId - the ID of the output Graph. Optional parameter. If no output graph is specified filtered items will be removed from the input graph. PathwayDefinition - pathway definition file. StatisticsOutputDir - The directory to output statistics (Optional). Incl... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 10 times \| Downloaded: 1 time Tags (9): filter \| gds \| graph \| ondex \| optimal path \| ovtk \| oxl \| pathway \| statistics	View
Taverna 1 Original Uploader Paul Fisher	Pfam Based Ortholog Filter (v1) Created: 19/08/09 @ 16:26:55 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow filters an Ondex graph based on the occurrence of Pfam orthologs within the graph. The result is a new Ondex graph. The parameters that can be used with this service are as follows: graphId - the ID of the input Graph. outputGraphId - the ID of the output Graph (Optional). If no output graph is specified filtered items will be removed from the input graph. ConfidenceThreshold - Threshold value for inparanoid confidence. Default value is 100. AnnotationScoreThreshold - Threshold... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 25 times \| Downloaded: 1 time Tags (10): annotation \| filter \| graph \| ondex \| orthologue \| ovtk \| oxl \| pfam \| protein \| terms	View
Taverna 1 Original Uploader Paul Fisher	Relation Neighbours Filter (v1) Created: 19/08/09 @ 16:28:09 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow filters a given Ondex graph based on some neighbour parameters supplied by the user. The result is a new Ondex graph. The parameters that can be used with this service are as follows: graphId - the ID of the input Graph. outputGraphId - the ID of the output Graph. Optional parameter. If no output graph is specified filtered items will be removed from the input graph. Depth - The Depth (distance from seed in relations) to apply the filter to ConceptID - The Concept ID to seed th... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 13 times \| Downloaded: 1 time Tags (6): filter \| graph \| ondex \| ovtk \| oxl \| relation nieghbour	View
Taverna 1 Original Uploader Paul Fisher	Relation Type Filter (v1) Created: 19/08/09 @ 16:29:10 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow filters a pre-existing ONdex graph based on a some paramters provided by the user. The parameters that can be used with this service are as follows: graphId - the ID of the input Graph. outputGraphId - the ID of the output Graph (Optional) parameter. If no output graph is specified filtered items will be removed from the input graph. TargetRelationType - Target RelationType to filter out. ConceptClassRestriction - Concept Class Restriction as ordered pair representing from/to C... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 14 times \| Downloaded: 1 time Tags (6): filter \| graph \| ondex \| ovtk \| oxl \| relation type	View
Taverna 1 Original Uploader Paul Fisher	Shortest Path (v1) Created: 19/08/09 @ 16:30:35 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow filters a given Ondex graph according to the shortest path (graph) algorithm. The result is a new Ondex graph. The parameters that can be used with this service are as follows: graphId - the ID of the input Graph. outputGraphId - the ID of the output Graph (Optional). If no output graph is specified filtered items will be removed from the input graph. StartConceptID - The Concept ID that starts the path. Valid value range is 1 to 2147483647. UseWeights - Use gds values as edge ... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 25 times \| Downloaded: 1 time Tags (7): filter \| gds \| graph \| ondex \| ovtk \| oxl \| shortest path	View
Taverna 1 Original Uploader Paul Fisher	Significance Filter (v1) Created: 19/08/09 @ 16:31:24 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow filters a given Ondex graph according to a level of significance set by the user. The result is a new Ondex graph. The parameters that can be used with this service are as follows: graphId - the ID of the input Graph. outputGraphId - the ID of the output Graph (Optional). If no output graph is specified filtered items will be removed from the input graph. TargetAttributeName - Target AttributeName to filter for significance. Significance - A significance value to filter relatio... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 16 times \| Downloaded: 1 time Tags (6): filter \| graph \| ondex \| ovtk \| oxl \| significance	View
Taverna 1 Original Uploader Paul Fisher	SubGraph Filter (v2) Created: 19/08/09 @ 16:38:17 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow filters a given Ondex graph to return a new ondex sub-graph. The parameters that can be used with this service are as follows: graphId - the ID of the input Graph. outputGraphId - the ID of the output Graph. Optional parameter. If no output graph is specified filtered items will be removed from the input graph. ConceptID - The root concept to start at. Valid value range is 1 to 2147483647. FirstRelationType - RelationType limitation for depth 1 (Optional). FirstConceptClass - C... Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 36 times \| Downloaded: 1 time Tags (7): concept \| filter \| graph \| ondex \| ovtk \| oxl \| sub-graph	View
Taverna 1 Original Uploader Paul Fisher	Tranitive Filter (v1) Created: 19/08/09 @ 16:34:16 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow filters an Ondex graph to extract a sub-graph. The result is a new Ondex graph containing only the transitive sub-graph. The parameters that can be used with this service are as follows: graphId - the ID of the input Graph. outputGraphId - the ID of the output Graph (Optional). If no output graph is specified filtered items will be removed from the input graph. CV - Seed cv that will be used to extract the subgraph (Optional). AttributeName - Seed attribute name that will be us... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 26 times \| Downloaded: 1 time Tags (7): cv \| filter \| graph \| ondex \| ovtk \| oxl \| transitive	View
Taverna 1 Original Uploader Paul Fisher	Unconnected Filter (v1) Created: 19/08/09 @ 16:35:08 Credits: Paul Fisher License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow removes any unconnected nodes from a given Ondex graph through filtering, and returns a new Ondex Graph. The parameters that can be used with this service are as follows: graphId - the ID of the input Graph. outputGraphId - the ID of the output Graph. Optional parameter. If no output graph is specified filtered items will be removed from the input graph. RemoveContextDependencies - Set true to remove context dependencies, otherwise unconnected concepts will still remain in the ... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 30 times \| Downloaded: 1 time Tags (6): filter \| graph \| ondex \| ovtk \| oxl \| unconnected	View
Taverna 2 Original Uploader Peter Li	Construction of skeleton SBML model using a list of yeast ORF numbers (v1) Created: 26/03/10 @ 17:08:13 \| Last updated: 26/03/10 @ 17:13:15 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow generates a skeleton SBML model consisting of the metabolic reactions for a given list of yeast enzymes ORF numbers Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 33 times \| Downloaded: 20 times Tags (7): graph \| image \| model \| ORF \| pathways \| sbml \| yeast	View Download (v1)
Taverna 2 Original Uploader Peter Li	Construction of skeleton SBML model using subsystem term (v1) Created: 26/03/10 @ 17:11:26 \| Last updated: 26/03/10 @ 17:12:06 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow generates a skeleton SBML model consisting of the metabolic reactions for a given subsystem term. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 49 times \| Downloaded: 24 times Tags (6): graph \| image \| model \| sbml \| systems_biology \| yeast	View Download (v1)
Taverna 1 Original Uploader trybik	mathPlot Web service (v1) Created: 26/01/11 @ 22:03:56 \| Last updated: 26/01/11 @ 22:04:31 Credits: trybik License: Creative Commons Attribution-Share Alike 3.0 Unported License Plotting operation which uses Mathematica (http://www.wolfram.com/mathematica/) software. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 19 times \| Downloaded: 8 times Tags (5): graph \| mathematica \| plot \| tav4sb \| web service	View Download (v1)
Taverna 1 Original Uploader trybik	[deprecated] Simulate SBML-derived ODEs (v1) Created: 26/01/11 @ 22:10:31 \| Last updated: 20/07/11 @ 14:05:59 Credits: trybik License: Creative Commons Attribution-Share Alike 3.0 Unported License This is a Taverna 1 version; if you're using latest Taverna 2 workbench please use: www.myexperiment.org/workflows/2264.html . Exemplary experiment using Tav4SB (http://bioputer.mimuw.edu.pl/tav4sb/) ODEs simulation and plotting Web service operations. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 19 times \| Downloaded: 11 times Tags (18): analysis \| example \| experiment \| graph \| mathematica \| ode \| plot \| sbml \| simulate \| simulations \| tav4sb	View Download (v1)
Taverna 1 Original Uploader trybik	[deprecated] Probabilistic Model Checking (PMC): plot results (v1) Created: 26/01/11 @ 22:17:00 \| Last updated: 20/07/11 @ 14:23:03 Credits: trybik License: Creative Commons Attribution-Share Alike 3.0 Unported License This is a Taverna 1 version; if you're using latest Taverna 2 workbench please use: www.myexperiment.org/workflows/2267 . Exemplary experiment using Tav4SB (http://bioputer.mimuw.edu.pl/tav4sb/) Mathematica plotting Web service operation. This is a second-part for the computationaly exhaustive PMC: compute results workflow (http://www.myexperiment.org/workflows/1790). Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 14 times \| Downloaded: 10 times Tags (10): example \| graph \| mathematica \| plot \| tav4sb	View Download (v1)
Taverna 2 Original Uploader trybik	Simulate SBML-derived ODEs (v2) Created: 20/07/11 @ 13:57:19 \| Last updated: 20/07/11 @ 14:02:43 Credits: trybik License: Creative Commons Attribution-Share Alike 3.0 Unported License Exemplary experiment using Tav4SB (http://bioputer.mimuw.edu.pl/tav4sb/) ODEs simulation and plotting Web service operations. Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 5 times \| Downloaded: 10 times Tags (11): analysis \| example \| experiment \| graph \| mathematica \| ode \| plot \| sbml \| simulate \| simulations \| tav4sb	View Download (v2)
Taverna 2 Original Uploader trybik	Probabilistic Model Checking (PMC): plot results (v1) Created: 20/07/11 @ 14:18:19 \| Last updated: 20/07/11 @ 14:21:27 Credits: trybik License: Creative Commons Attribution-Share Alike 3.0 Unported License Exemplary experiment using Tav4SB (http://bioputer.mimuw.edu.pl/tav4sb/) Mathematica plotting Web service operation. This is a second-part for the computationaly exhaustive PMC: compute results workflow (http://www.myexperiment.org/workflows/2266). Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 7 times \| Downloaded: 5 times Tags (5): example \| graph \| mathematica \| plot \| tav4sb	View Download (v1)
Taverna 2 Original Uploader Gstalloch	Fertilzer Use Ist 600 (v1) Created: 21/09/11 @ 08:52:43 \| Last updated: 21/09/11 @ 08:52:41 Credits: Gstalloch License: Creative Commons Attribution-Share Alike 3.0 Unported License Example using the SpreadsheetImport service to import data from an Excel spreadsheet. The workflow imports the file spreadsheet file FertilzerUse.xlsx and generates a graph from the date. The source data is from http://www.myexperiment.org/files/568/download/FertilizerUse.xls. Based on the water use workflow by David Withers Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 2 times \| Downloaded: 3 times Tags (4): graph \| ist 600 \| spreadsheet \| workflow	View Download (v1)
Taverna 2 Original Uploader Gstalloch	Broccoli production comparisons in NY and NJ between 1960 and 1965 Ist 600 (v1) Created: 21/09/11 @ 15:23:11 \| Last updated: 21/09/11 @ 15:23:08 Credits: Gstalloch License: Creative Commons Attribution-Share Alike 3.0 Unported License Example using the SpreadsheetImport service to import data from an Excel spreadsheet. The workflow imports the file spreadsheet file FertilzerUse.xlsx and generates a graph from the date. The source data is from http://www.myexperiment.org/files/568/download/FertilizerUse.xls. Based on the water use workflow by David Withers Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 4 times \| Downloaded: 4 times Tags (3): graph \| spreadsheet \| workflow	View Download (v1)
Taverna 2 Original Uploader Kayleigh Ayn Bohémier	[untitled] (v2) Created: 27/11/11 @ 23:05:31 \| Last updated: 27/11/11 @ 23:10:52 Credits: Kayleigh Ayn Bohémier Attributions: Spreadsheet Import Example Broccoli: A State Comparison License: Creative Commons Attribution-Share Alike 3.0 Unported License This is a workflow for a Cyberinfrastructure class (Fall 2011) at Syracuse University. It takes information from GapMinder and runs it through a workflow to produce a graph. The original data sets can be found here: https://spreadsheets.google.com/pub?key=pyj6tScZqmEdrsBnj2ROXAg&gid=0 (Literacy rate, adult total) https://spreadsheets.google.com/pub?key=pyj6tScZqmEdIyrBS31XAaw&gid=0 (Income share of poorest 20%) Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 1 \| Citations: 0 Viewed: 8 times \| Downloaded: 6 times Tags (2): gapminder \| graph	View Download (v2)

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ONDEX Graphs

Unique name: ONDEX Created: Tuesday 10 February 2009 @ 10:45:09 (GMT)

A group for sharing ONDEX graphs in oxl format http://ondex.sourceforge.net/ http://www.ondex.org/

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Paul Fisher

Ondex and Taverna Tutorial

Created: 22/10/09 @ 13:50:53 | Last updated: 22/10/09 @ 13:51:51

Credits: George

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Biological Data Integration Using Ondex and Taverna: A Tutorial 25/26th November 2009 The University of Manchester The Ondex SABR project (http://ondex.org/sabr.html) invite you to a two-day tutorial that aims to show participants how to use Ondex and Taverna to perform common biological data collection, integration and visualisation tasks.

File type: Word document

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