Tag Results

Items tagged with "locus" (3)

Note: some items may not be visible to you, due to viewing permissions.

Packs (1)

Creator:

Paul Fisher

Genotype to Pathway

Created: 11/08/09 @ 14:44:16 | Last updated: 11/08/09 @ 14:52:12

This pack is for investigating links between the genotype of an organisms to possible pathways. This constitutes half of the pathway-driven approach, genotype to pathway, and pathway to phenotype.

18 items in this pack

Comments: 0 | Viewed: 53 times | Downloaded: 2 times

Tags:

View

Download

Workflows (2)

Taverna 1

Original Uploader

Paul Fisher

Arabidopsis thaliana QTL Analysis (v1)

Created: 08/07/09 @ 16:26:13 | Last updated: 14/12/09 @ 11:59:14

Credits: Paul Fisher

License: Creative Commons Attribution-No Derivative Works 3.0 Unported License

This workflow searches for genes which reside in a QTL (Quantitative Trait Loci) region in Arabidopsis thaliana. The workflow requires an input of: a chromosome name or number; a QTL start base pair position; QTL end base pair position. Data is then extracted from BioMart to annotate each of the genes found in this region. The UniProt identifiers are then sent to KEGG to obtain KEGG gene identifiers. The KEGG gene identifiers are then used to searcg for pathways in the KEGG pathway database. ...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 39 times | Downloaded: 15 times

Tags (15):

arabidopsis
|
chromosome
|
crop
|
ensembl
|
kegg
|
loci
|
locus
|
nucleotide
|
pathway
|
pathways
|
plants
|
qtl
|
thaliana
|
trait
|
uniprot

View

Download (v1)

Taverna 1

Original Uploader

Paul Fisher

Pathways and Gene annotations for QTL region (v2)

Created: 20/11/09 @ 14:04:37 | Last updated: 20/11/09 @ 14:04:39

Credits: Paul Fisher

Attributions: Pathways and Gene annotations for QTL region

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow searches for genes which reside in a QTL (Quantitative Trait Loci) region in the Pig, Sus scrofa. The workflow requires an input of: a chromosome name or number; a QTL start base pair position; QTL end base pair position. Data is then extracted from BioMart to annotate each of the genes found in this region. The Entrez and UniProt identifiers are then sent to KEGG to obtain KEGG gene identifiers. The KEGG gene identifiers are then used to searcg for pathways in the KEGG pathway ...

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 92 times | Downloaded: 6 times

Tags (28):