myExperiment - Tags

Workflows (13)

Taverna 1 Original Uploader Fong Chun Chan	DataBiNS - Data Mining Workflow for Biological Pathways and Non-Synonymous SNPs (v2) Created: 04/12/07 @ 23:43:01 \| Last updated: 04/12/07 @ 23:45:25 Credits: Fong Chun Chan License: Creative Commons Attribution-Share Alike 3.0 Unported License No description Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 435 times \| Downloaded: 128 times Tags (12): bioinformatics \| biomoby \| entrez \| hapmap \| kegg \| Kegg Pathways \| ls-snp \| OMIM \| pdb \| pubmed \| snps \| swiss prot	View Download (v2)
Taverna 1 Original Uploader Pieter Neerincx	GeneIlluminator_Disambiguate (v2) Created: 27/02/08 @ 00:43:33 \| Last updated: 03/03/08 @ 22:11:50 Credits: Pieter Neerincx Alako License: Creative Commons Attribution-Share Alike 3.0 Unported License Example workflow demonstrating how to use GeneIlluminator_Disambiguate, a synchronous BioMOBY service for gene symbol disambiguation. If a gene symbol is ambiguous this service provides GI_Clusters describing which different genes, sharing the same symbol, exist in different parts of the tree of life. Provides also gene symbol aliases associated to the input gene symbol. (This is the same output as the one from the GeneIlluminator_GetClusters service.) In addition this service takes an Organi... Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 113 times \| Downloaded: 38 times Tags (4): biomoby \| disambiguation \| gene symbol \| text mining	View Download (v2)
Taverna 1 Original Uploader Pieter Neerincx	GeneIlluminator_GetClusters (v2) Created: 27/02/08 @ 00:46:22 \| Last updated: 03/03/08 @ 22:11:17 Credits: Pieter Neerincx Alako License: Creative Commons Attribution-Share Alike 3.0 Unported License Example workflow demonstrating how to use GeneIlluminator_GetClusters, a synchronous BioMOBY service for gene symbol disambiguation. If a gene symbol is ambiguous this service provides GI_Clusters describing which different genes, sharing the same symbol, exist in different parts of the tree of life. Provides also gene symbol aliases associated to the input gene symbol. (Use GeneIlluminator_GetGraph for a graphical representation of the clusters or GeneIlluminator_Disambiguate to get the mos... Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 68 times \| Downloaded: 33 times Tags (4): biomoby \| disambiguation \| gene symbol \| text mining	View Download (v2)
Taverna 1 Original Uploader Pieter Neerincx	GeneIlluminator_GetGraph (v2) Created: 27/02/08 @ 00:48:39 \| Last updated: 03/03/08 @ 22:10:54 Credits: Pieter Neerincx Alako License: Creative Commons Attribution-Share Alike 3.0 Unported License Example workflow demonstrating how to use GeneIlluminator_GetGraph, a synchronous BioMOBY service for gene symbol disambiguation. If a gene symbol is ambiguous this service uses GeneIlluminator to create clusters describing which different genes, sharing the same symbol, exist in different parts of the tree of life. GeneIlluminator provides also aliases associated to the input gene symbol. Finally, a graphical overview of the clusters and gene symbols is created in SVG format and returned to ... Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 62 times \| Downloaded: 33 times Tags (5): biomoby \| disambiguation \| gene symbol \| svg \| text mining	View Download (v2)
Taverna 1 Original Uploader Pieter Neerincx	GeneIlluminator_GetPubMedQuery (v2) Created: 27/02/08 @ 00:49:44 \| Last updated: 03/03/08 @ 22:08:39 Credits: Pieter Neerincx Alako License: Creative Commons Attribution-Share Alike 3.0 Unported License Example workflow demonstrating how to use GeneIlluminator_GetPubMedQuery, a synchronous BioMOBY service for gene symbol disambiguation. If a gene symbol is ambiguous this service uses GeneIlluminator to create clusters describing which different genes, sharing the same symbol, exist in different parts of the tree of life. GeneIlluminator provides also aliases associated to the input gene symbol. Finally, using the cluster characteristics it creates a boolean PubMed query that could be used to... Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 88 times \| Downloaded: 42 times Tags (5): biomoby \| disambiguation \| gene symbol \| pubmed \| text mining	View Download (v2)
Taverna 1 Original Uploader Alan Williams	Fetch Dragon images from BioMoby (v3) Created: 05/03/08 @ 14:09:35 \| Last updated: 14/07/10 @ 16:46:37 Credits: Tomoinn License: Creative Commons Attribution 3.0 Unported License Fetch images and annotations of snapdragons Rating: 0.0 / 5 (0 ratings) \| Versions: 3 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 305 times \| Downloaded: 108 times Tags (8): annotation \| bioinformatics \| biomoby \| example \| image \| mygrid \| snapdragon \| taverna	View Download (v3)
Taverna 1 Original Uploader Pieter Neerincx	AffyArrayQualityAnalysis (v2) Created: 13/03/08 @ 14:38:03 \| Last updated: 16/02/09 @ 16:41:29 Credits: Pieter Neerincx Philipg License: Creative Commons Attribution-Share Alike 3.0 Unported License The AffyArrayQualityAnalysis web services provide quality control for raw Affymetrix GeneChip data. They are wrappers around Philip de Groot's quality control R script to provide remote programmatic access. This example workflow demonstrates the use of the AffyArrayQualityAnalysis services. The flow is as follows: A client executes the AffyArrayQualityAnalysis_submit service with two inputs: a User object and a collection of URLs linking to CEL files. The User object contains a u... Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 2 \| Citations: 0 Viewed: 186 times \| Downloaded: 58 times Tags (6): affymetrix \| biomoby \| microarray \| nugo \| quality control \| r	View Download (v2)
Taverna 1 Original Uploader Pieter Neerincx	AffyArrayNormalization (v2) Created: 16/02/09 @ 16:32:36 \| Last updated: 16/02/09 @ 16:42:10 Credits: Pieter Neerincx Philipg License: Creative Commons Attribution-Share Alike 3.0 Unported License The AffyArrayNormalization web services normalise raw Affymetrix GeneChip data. They are wrappers around Philip de Groot's normalization R script to provide remote programmatic access. This example workflow demonstrates the use of the AffyArrayNormalization services. The flow is as follows: A client executes the AffyArrayNormalization_submit service with two inputs: a User object and a collection of URLs linking to CEL files. The User object contains a user ID, a password and an ... Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 211 times \| Downloaded: 90 times Tags (6): affymetrix \| biomoby \| microarray \| normalization \| nugo \| r	View Download (v2)
Kepler Original Uploader Leidou	BioMoby_Blast (v1) Created: 15/06/10 @ 19:45:33 \| Last updated: 15/06/10 @ 19:45:34 Credits: Leidou License: Creative Commons Attribution-Share Alike 3.0 Unported License The workflow implements blast by using the BioMoby services.It shows the configurability of the comad actor. Thousands of BioMoby services could be modeled by one comad actor. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 29 times \| Downloaded: 24 times Tags (3): biomoby \| comad \| kepler	View Download (v1)
Kepler Original Uploader Leidou	BioMoby_PhylogeneticTree (v1) Created: 15/06/10 @ 19:47:04 \| Last updated: 15/06/10 @ 19:47:05 Credits: Leidou License: Creative Commons Attribution-Share Alike 3.0 Unported License The workflow makes phylogenetic tree analysis by using the BioMoby services.It shows the configurability of the comad actor. Thousands of BioMoby services could be modeled by one comad actor. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 26 times \| Downloaded: 17 times Tags (3): biomoby \| comad \| kepler	View Download (v1)
Taverna 1 Original Uploader EdwardK...	Fetch Dragon images from BioMoby (v1) Created: 14/07/10 @ 16:20:46 \| Last updated: 14/07/10 @ 16:20:48 Credits: EdwardKawas Tomoinn Attributions: Fetch Dragon images from BioMoby License: Creative Commons Attribution-Share Alike 3.0 Unported License Fetch images and annotations of snapdragons Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 16 times \| Downloaded: 11 times Tags (8): annotation \| bioinformatics \| biomoby \| example \| image \| mygrid \| snapdragon \| taverna 1	View Download (v1)
Taverna 2 Original Uploader Alan Williams	Fetch Dragon images from BioMoby (v1) Created: 12/07/11 @ 13:52:04 \| Last updated: 12/07/11 @ 13:52:05 Credits: Tomoinn License: Creative Commons Attribution 3.0 Unported License Fetch images and annotations of snapdragons Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 5 times \| Downloaded: 6 times Tags (3): biomoby \| example \| taverna	View Download (v1)
Taverna 2 Original Uploader Alan Williams	BioMoby tutorial workflow (v1) Created: 12/07/11 @ 15:50:21 \| Last updated: 12/07/11 @ 15:50:22 Credits: EdwardKawas License: Creative Commons Attribution 3.0 Unported License A workflow from part of the BioMoby tutorial Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 16 times \| Downloaded: 9 times Tags (3): biomoby \| example \| taverna	View Download (v1)

Packs (1)

Creator:

Leidou

comad biomoby demo workflow

Created: 15/06/10 @ 19:48:35 | Last updated: 15/06/10 @ 19:48:51

It contains workflows to implement some biological analysis function by accessing the BioMoby service. The configurability of the comad actor is demonstrated. Thousands of BioMoby services could be modeled by one comad actor.

2 items in this pack

Comments: 0 | Viewed: 8 times | Downloaded: 7 times

Tags:

View

Download

Groups (1)

Administrator:

Fong Chun Chan

Biomoby

Unique name: biomoby Created: Tuesday 04 December 2007 @ 09:48:10 (GMT)

This is a group for those involved in the Biomoby world. Whether you are a developer or simple a user of it, you can join this group to keep up to date on the latest Biomoby news.

0 shared items | 0 announcements

Members (12):

Tags:

View

Files (1)

Uploader:

Katy Wolstencroft

The Data Playground: An Intuitive Workflow Specification Environment

Created: 02/06/08 @ 14:46:40

Credits: Katy Wolstencroft Andrew Gibson

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a copy of the paper we wrote for the 3rd International Conference on e-Science and Grid Computing 2007 (http://www.escience2007.org/index.asp). It won the Best Paper award!

File type: Adobe PDF

Rating: 4.0 / 5 (1 rating) | Comments: 0 | Viewed: 88 times | Downloaded: 130 times

Tags:

View

Download

Tag Results

Items tagged with "biomoby" (16)