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User: Marco Roos
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Name: Marco Roos Joined: Saturday 21 July 2007 @ 10:43:23 (GMT) Last seen: Sunday 22 January 2012 @ 16:17:42 (GMT) Email (public): m.roos [at] lumc.nl Website: http://www.lumc.nl/con/6020/39898/909290026392525 Location: Leiden, Netherlands |
Marco Roos has been credited 39 times Marco Roos has an average rating of: 4.0 / 5 (7 ratings in total) for their items |
My role as a biologist and bioinformatician in e-science is to help increase the usefulness of emerging information technologies for biology, while experimenting with new ways to increase insight into mechanisms related to structure and function of DNA in the cell. I experiment with technologies such as workflow, knowledge extraction from text, semantic web and virtual research environments such as myExperiment.
More information on the blog below (originally uploaded as an example for the 'NBIC on workflows' workshop in Lunteren, the Netherlands, March 2008).
Other contact details:
Also see my web page at the University of Amsterdam: http://home.medewerker.uva.nl/m.roos1
Interests:
Structure/function relationship of DNA in the cell, e-science, automated support for modeling biological mechanisms by knowledge extraction and semantic web technology.
Field/Industry: Biology
Occupation/Role(s): PhD, e-(bio)scientist (biology 'power-user'), biology e-Science liaison for NBIC and e-Science organisations
Organisation(s):
Leiden University Medical Centre
University of Amsterdam
NBIC
OMII-UK / myGrid
Groups that Marco Roos owns
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Unique name: biorange_nl Created: Wednesday 01 August 2007 @ 13:03:24 (GMT)
Introduction
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BioRange[1] is a Dutch nationwide program for bioinformatics research. It is associated with VL-e[2], an e-science research project that investigates and develops technology to enhance science through general grid-based infrastructure and tools for six diverging applications. Bioinformatics is one of them. Another association is with BioAssist[3], a bioinformatics ...
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Unique name: bioassist_nl Created: Wednesday 01 August 2007 @ 13:05:51 (GMT)
NBIC's BioAssist program
BioAssist[1], organised by the Netherlands BioInformatics Centre (NBIC[2]), is a program for support and dissemination of bioinformatics tools and expertise in the Netherlands. It advocates the use of e-science standards such as web services and workflow. It is associated with the projects VL-e[3] and BioRange[4].
Links:
http://www.nbic.nl/support/BioAssist...
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Created: Wednesday 07 November 2007 @ 18:45:12 (GMT)
Adaptive Information Disclosure (http://adaptivedisclosure.org)
Collaboration within the Dutch Virtual Laboratory e-Science project (http://www.vl-e.nl)
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Created: Monday 12 November 2007 @ 23:01:26 (GMT)
The Text mining network on myExperiment.org
The text mining network on myExperiment.org is a network of
users of text mining workflows and services
developers of text mining workflows
developers of text mining services
Goals
(general) increase the efficacy of the field
a place for users/developers to find text mining resources and experts
derive text mining...
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Created: Tuesday 22 January 2008 @ 17:46:11 (GMT)
Group for scientists associated with NBIC (Netherlands BioInformatics Centre) to discuss anything about (Taverna) workflows. New members are kindly requested to provide some information about their (future) interest in (Taverna) workflows in their profile description or in a seperate file with a reference in their profile description.
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Created: Wednesday 23 January 2008 @ 15:17:17 (GMT)
Group of researchers of the Virtual Laboratory e-Science (VL-e) project in the Netherlands. This is a large nation wide e-science research project funded by BSIK grants from the Dutch ministry of Economic Affairs. Its activities range from Grid infrastructure, to middleware, to (six) applications. The projects BioRange and BioAssist (also groups here) are tightly associated with VL-e.
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Created: Tuesday 29 January 2008 @ 13:52:50 (GMT)
A group to share preliminary scientific material in support of scientific collaboration between AID in Amsterdam (plus close friends) and myGrid (plus close friends).
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Unique name: eScienceSupportTeam4NBIC Created: Sunday 16 March 2008 @ 22:23:11 (GMT)
This group brings together scientists with expertise in both (medical) bioinformatics and e-science. The members can give advice to bioinformaticians who want to adopt an 'e-science approach'. They want to share their expertise and experience for the application of technologies such as workflow, web/biomoby services, grid, semantic web, etcetera.
The group was founded in particular for the Du...
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Created: Tuesday 03 June 2008 @ 09:46:58 (GMT)
Group for sharing bioinformatics tools that can enhance life science research.
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Created: Friday 22 August 2008 @ 10:49:27 (GMT)
Group for collaboration of Andy, Scott, and Marco.
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Unique name: BioWiseInformationManagement2009 Created: Saturday 23 May 2009 @ 13:58:01 (GMT)
Group in support of the course 'Management of Life Science Information', 25/5-21/6 2009, organized for the Netherlands BioInformatics Centre (NBIC) as part of the BioWise programme.
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Unique name: CWA_ContentCapture Created: Tuesday 01 September 2009 @ 13:06:04 (GMT)
Concept Web Alliance working group on content capture
CWA wants to help disclose experiment-derived knowledge from within the scientific community via concepts and relations between concepts, stored as concept-relation-concept triples that together form a 'nano-publication'. A nano-publication contains a single 'unit of though', and minimal provenance about who made it, where it was stated, ho...
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Unique name: CWA_Users Created: Tuesday 01 September 2009 @ 16:35:48 (GMT)
Group for (potential) users of the Concept Web.
See below for information on CWA taken from the Concept Web Alliance Blog. Also see other CWA groups here on myExperiment.
Please request to join this group if you are (i) a scientist working in application fields such as life science, (ii) interested in computer support for sharing knowledge between (computational) experiments and between scie...
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Unique name: LeidenBioSemanticsUsers Created: Wednesday 23 September 2009 @ 01:10:24 (GMT)
Group of colleagues at the Human Genetics Department of the Leiden University Medical Centre and closely collaborating groups who are interested to be prime users of new developments in BioSemantics and e-Science, and in return are willing to provide feedback and suggestions. See http://biosemantics.org for more information about the BioSemantics collaboration in the Netherlands.
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Created: Thursday 30 June 2011 @ 13:06:48 (GMT)
Group for members of the BioSemantics group and their close collaborators.
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Other Groups that Marco Roos belongs to
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Unique name: wf4ever Created: Sunday 06 February 2011 @ 18:22:05 (GMT)
Wf4Ever aims at providing the methods and tools required to ensure the long-term preservation of scientific workflows in order to support the scientific discovery process and the development of new scientific assets.
See http://www.wf4ever-project.org/
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Created: Friday 14 October 2011 @ 12:27:54 (GMT)
This is the group where you can find tutorial exercises, workflows and related material about using Taverna in the NBIC course on Managing Life Science Data
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Unique name: NextGenSeq Created: Monday 23 November 2009 @ 11:20:47 (GMT)
This group is for people wishing to contribute / find out more about 'Next Generation Sequencing' technology and data.
Please feel free to join this group and add any workflows you think others may benefit from.
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Unique name: e Created: Saturday 24 October 2009 @ 11:20:06 (GMT)
Taskforce of BioAssist, part of NBIC II in The Netherlands, that is responsible for developing e-science tools and workflows
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Unique name: ConceptWebReasoning Created: Saturday 15 August 2009 @ 06:01:22 (GMT)
The Triple Browser & Reasoning (TBR) Working Group of the Concept Web Alliance confronts the major challenges associated with efficiently searching and 'creatively' reasoning with massive quantities of concept triples.
In the immediate time frame, members of the of the TBR will focus on (1) formulating precise definitions of how the Concept Web should in principle (and might in ...
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Created: Monday 17 August 2009 @ 13:15:03 (GMT)
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mso-style-parent:"";...
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Unique name: CWA Created: Monday 27 July 2009 @ 12:48:15 (GMT)
This group aims to connect all people actively interested or participating in the new initiative, the Concept Web Alliance.(CWA)
the Aim of the CWA is: “To enable an open collaborative environment to jointly address the challenges associated with high volume scholarly and professional data production, storage, interoperability and analyses for knowledge discovery.“
The 'Magnet Gro...
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Created: Tuesday 18 August 2009 @ 09:11:18 (GMT)
This group is for NBICommons employees and invited partners to keep track of a common agenda and running projects.
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Created: Friday 31 July 2009 @ 11:53:06 (GMT)
This group has been set up to exchange ideas, documents, workflows and news about the BioBanking Platform of NBIC in the The Netherlands. However, international members of the Concept Web Alliance or the BBMRI initiatives are very welcome to join. It will keep you updated on all technical developments regarding data harmonization and other aspects of BioBanking.
Colleagues involved in the P3G ...
2 shared items | 2 announcements Members (32): This Group has not been tagged yet! Latest announcement:: Visit Paris to discuss WikiPedia Scholar with Segolene and Denis |
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Unique name: hcls Created: Friday 01 May 2009 @ 17:12:56 (GMT)
The mission of the Semantic Web for Health Care and Life Sciences Interest Group (HCLSIG) is to develop, advocate for, and support the use of Semantic Web technologies for biological science, translational medicine and health care. These domains stand to gain tremendous benefit by adoption of Semantic Web technologies, as they depend on the interoperability of information from many domains and ...
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Unique name: myExperimentBeanshellCollection Created: Thursday 06 March 2008 @ 11:41:29 (GMT)
Group for development, curation and maintenance of collections of generic Beanshell processors.
Join this group if you have some cool Beanshells that you want to share! Please add your Beanshells to the myExperimentBeanshellCollection workflow and don't create new workflows for this purpose. (It's not fun to load dozens of workflows manually to load a fragmented collection of Beanshells.) If t...
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Created: Thursday 07 February 2008 @ 13:56:13 (GMT)
To discuss annotation of biological web services. How can we help biologists and bioinformaticians find and use the web services they are looking for ???
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Created: Saturday 21 July 2007 @ 19:32:46 (GMT)
This project provides tools and applications which utilise the myExperiment Mashup API (maintained by Don Cruickshank)
iGoogle Gadgets
Workflow Trading Card - this gadget is great for blogs! show your workflow to world using a customisable trading card (you can set the colour scheme and everything!!)
Workflows RSS Feed - stay up to date with the latest workflows and most rece...
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Created: Friday 27 July 2007 @ 15:17:45 (GMT)
Introduction
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This is the initial project page. You can edit this page like a wiki using [Markdown syntax][1] or by adding html.
[1]: http://daringfireball.net/projects/markdown/syntax
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Unique name: amsterdam Created: Saturday 21 July 2007 @ 08:27:16 (GMT)
Amsterdam
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Eventually members of the VL-e project could log in here. At the moment, Amsterdam is overrepresented from NL and is handy for Marco and Scott to share workflows.
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