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User: Andrew Gibson
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Name: Andrew Gibson Joined: Tuesday 24 July 2007 @ 10:17:42 (GMT) Last seen: Wednesday 27 January 2010 @ 09:08:34 (GMT) Email (public): gibson [at] uva.nl Website: Not specified Location: Amsterdam, Netherlands |
Andrew Gibson has been credited 3 times Andrew Gibson has an average rating of: 0.0 / 5 (0 ratings in total) for their items |
My background is in biology, and I am now mostly interested in developing emerging technologies from computer science and trying to make them more accessible to scientists, and as such am interested in what myExperiment is doing.
Other contact details:
Not specifiedInterests:
Bioinformatics
OWL Ontology Development
Semantic Web
e-Science
Field/Industry: Academia
Occupation/Role(s): Postdoctoral Researcher
Organisation(s):
University of Amsterdam
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Created: 02/06/08 @ 14:46:40
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
This is a copy of the paper we wrote for the 3rd International Conference on e-Science and Grid Computing 2007 (http://www.escience2007.org/index.asp). It won the Best Paper award!
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Workflow
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Created: 16/05/09 @ 01:06:26 | Last updated: 16/05/09 @ 01:13:18
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License: Creative Commons Attribution-No Derivative Works 3.0 Unported License
This workflow is for demonstration purposes only. Please contact the authors if you wish to try it. We will gladly collaborate with you.
Summary
This workflow extracts proteins and protein relations from Medline. Extracted protein names (symbols of at least 3 characters) are validated against mouse, rat, and human UniProt symbols, so the results are limited to these species. This workflow follows the following basic steps:
it retrieves documents relevant for the query string
i...
Rating: 0.0 / 5 (0 ratings) | Versions: 7 | Reviews: 0 | Comments: 1 | Citations: 0 Viewed: 150 times | Downloaded: 31 times Tags (10): |
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Created: 17/10/08 @ 15:49:50 | Last updated: 18/10/08 @ 21:20:52
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow takes a spreadsheet exported as a tab delimited file, such as an Excel spreadsheet. The style is expected as a matrix of data with the first row containing the column names and the first column containing the row names (see below). The top left cell is discarded.
The workflow outputs three lists. A list of column names, a list of row names, and a two deep list of data points. The first list is a list of the rows and the sublist is a list of values of the cells from the columns....
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