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Items tagged with "maxd" (6)

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Workflows (5)

Taverna 1 Original Uploader Peter Li	Query Maxd microarray database (v1) Created: 14/11/07 @ 16:01:50 \| Last updated: 22/11/07 @ 12:06:32 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License Retrieves data from the maxd database given name of data set Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 122 times \| Downloaded: 77 times Tags (3): beanshell \| maxd \| microarray	View Download (v1)
Taverna 1 Original Uploader Peter Li	Mapping microarray data onto metabolic pathways (v1) Created: 14/11/07 @ 16:51:26 \| Last updated: 22/11/07 @ 10:39:32 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow maps microarray data onto metabolic pathway diagrams represented as SBML models drawn using Cell Designer. To run this workflow requires libsbml to be installed into taverna - see http://www.mcisb.org/software/taverna/libsbml/index.html Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 1 Viewed: 540 times \| Downloaded: 178 times Tags (5): beanshell \| maxd \| microarray \| pathway \| sbml	View Download (v1)
Taverna 1 Original Uploader Peter Li	Identification of differential genes using t-tests by R (v2) Created: 15/04/08 @ 15:37:42 \| Last updated: 01/07/08 @ 17:21:18 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow starts by retrieving the names of microarray datasets from the Maxd database. The user has to select sets of control and test data for analysis using t-tests by R. A list of significant differentially expressed genes is then analysed using the Go Term Finder tool which generates a list of GO terms associated with the genes. A CSV file containing the list of significant genes is also generated. Rating: 5.0 / 5 (1 rating) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 1 Viewed: 463 times \| Downloaded: 156 times Tags (6): beanshell \| maxd \| microarray \| r \| systems biology \| user_interaction	View Download (v2)
Taverna 1 Original Uploader Peter Li	Identification of differential genes using the LIMMA Bioconductor package within R (v1) Created: 02/07/08 @ 11:24:12 \| Last updated: 02/07/08 @ 11:28:21 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow starts by retrieving the names of microarray datasets from the Maxd database. The user has to select sets of control and test data which are then analysed by the LIMMA Bioconductor package in an R script. This produces a list of significant differentially expressed genes which is then analysed using the Go Term Finder tool to generate a PDF report of the common GO terms associated with the genes. A CSV file containing the list of sign... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 584 times \| Downloaded: 224 times Tags (6): bioconductor \| limma \| maxd \| microarray \| r \| user_interaction	View Download (v1)
Taverna 2 Original Uploader Peter Li	Calculating frequencies of gene expression levels using microarray data in MaxD (v1) Created: 15/03/10 @ 08:43:31 Credits: Peter Li License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow retrieves data from the MaxD microarray database and calculates the frequencies of gene expression levels using an R script Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 55 times \| Downloaded: 0 times Tags (9): beanshell \| database \| expression \| gene \| image \| maxd \| microarray \| r \| xpath	View