Workflow Entry: Fetch Dragon images from BioMoby

Created at: 05/03/08 @ 14:09:35 Last updated: 14/07/10 @ 16:46:37

Version 3 (latest) (of 3)

Version created on: 14/07/10 @ 16:46:36 by: Alan Williams | Revision comments Expand

Title: Fetch Dragon images from BioMoby

Type: Taverna 1

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Description

Fetch images and annotations of snapdragons

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Download Workflow File/Package (SCUFL)

Run

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Option 1:

Launch in Taverna

Note: you need to have both the WHIP Launcher and the Taverna myExperiment/WHIP plugin installed on your machine for this to work. See here for information.

Option 2:

Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/162/download?version=3
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Workflow Components

Inputs (0)

Processors (8)

Name	Type	Description
namespace	stringconstant
id	stringconstant
Decode_base64_to_byte	local
getDragonSimpleAnnotatedImages	biomobywsdl	Consumes DragonDB allele identifiers and returns a collection of images of plants homozygous for that allele
getJpegFromAnnotatedImage	biomobywsdl	This service takes in an annotated jpeg image and returns just the image.
Object	biomobyobject	an object
Parse_Moby_Data_JPEGImage	biomobyparser	Processor to parse the datatype b64_encoded_jpeg
Parse_Moby_Data_SimpleAnnotatedJPEGImage	biomobyparser	Processor to parse the datatype SimpleAnnotatedJPEGImage

Beanshells (0)

Outputs (2)

Name	Description
images
annotations

Links (9)

Source	Sink
Decode_base64_to_byte:bytes	images
Object:mobyData	getDragonSimpleAnnotatedImages:Object(input)
Parse_Moby_Data_JPEGImage:image_'content'	Decode_base64_to_byte:base64
getDragonSimpleAnnotatedImages:SimpleAnnotatedJPEGImage(Collection - 'image' As Simples)	Parse_Moby_Data_SimpleAnnotatedJPEGImage:mobyData('SimpleAnnotatedJPEGImage')
getDragonSimpleAnnotatedImages:SimpleAnnotatedJPEGImage(Collection - 'image' As Simples)	getJpegFromAnnotatedImage:SimpleAnnotatedJPEGImage(annotatedImage)
getJpegFromAnnotatedImage:b64_encoded_jpeg(image)	Parse_Moby_Data_JPEGImage:mobyData('b64_encoded_jpeg')
id:value	Object:id
namespace:value	Object:namespace
Parse_Moby_Data_SimpleAnnotatedJPEGImage:image_'Description'	annotations