Using Biomart and EMBOSS soaplab services, This workflow retrieves a number of sequences from 3 species: mouse, human, rat; align them, and returns a plot of the alignment result. Corresponding sequence ids are also returned.
Designed to show the use of EMBOSS based Soaplab services from Taverna, this workflow has no inputs as all initial values are specified as string constants. A sequence set is fetched using the seqret tool, then simultaneously scanned for predicted transmembrane regions and subjected to a multiple alignment using emma. This alignment is then plotted to a set of PNG images and also used to build a profile using the prophecy and prophet tools.
This workflow shows the use of the iteration strategy editor to ensure that only relevant combinations of inputs are used during an implicit iteration.
Created: 29/09/08 @ 11:57:45
| Last updated: 29/09/08 @ 11:59:09
The pack contains a number of test workflows i built when i'm annotating web services.
The workflows (one or two services) have all example parameters.
Cool, now you can test some web services before add them to your workflows.
Do you have any workflows you built to test a service? please add them to the pack.
List of myGrid annotated web services: http://www.mygrid.org.uk/feta/mygrid/descriptions/
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This is the Taverna 2 version of the Biomart and Emboss Analysis workflow
http://www.myexperiment.org/workflows/158
Using Biomart and EMBOSS soaplab services, This workflow retrieves a number of sequences from 3 species: mouse, human, rat; align them, and returns a plot of the alignment result. Corresponding sequence ids are also returned.
Previous versions of this workflow only returned sequences with an ID mapped to a MIM_morbid_accession. This was primarily to reduce the numbe...
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