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InviteGroup: Taverna 1.7.1 workflow workbench examples
The workflows visible from this group correspond to the examples from the Taverna 1.7.1 workflow workbench
Created at: Wednesday 05 March 2008 @ 13:45:09 (GMT)
Unique name: tavernaExamples
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Created: 05/03/08 @ 13:55:45 | Last updated: 23/05/12 @ 11:18:50
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License: Creative Commons Attribution 3.0 Unported License
If the input is true then the string 'foo' is emited, if false then 'bar'. Just a simple example to show how the monster works, so to speak.
Note that this type of workflow is not suitable for Taverna 2. An alternative mechanism is recommended.
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 1 | Citations: 0 Viewed: 1600 times | Downloaded: 471 times Tags (5): |
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Created: 15/09/09 @ 15:11:11 License: Creative Commons Attribution 3.0 Unported License
Using Biomart and EMBOSS soaplab services, This workflow retrieves a number of sequences from 3 species: mouse, human, rat; align them, and returns a plot of the alignment result. Corresponding sequence ids are also returned.
Rating: 0.0 / 5 (0 ratings) | Versions: 4 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 1157 times | Downloaded: 391 times Tags (6): |
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Created: 05/03/08 @ 14:05:20 | Last updated: 25/03/08 @ 14:43:35
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License: Creative Commons Attribution 3.0 Unported License
Designed to show the use of EMBOSS based Soaplab services from Taverna, this workflow has no inputs as all initial values are specified as string constants. A sequence set is fetched using the seqret tool, then simultaneously scanned for predicted transmembrane regions and subjected to a multiple alignment using emma. This alignment is then plotted to a set of PNG images and also used to build a profile using the prophecy and prophet tools.
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Created: 05/03/08 @ 14:08:52 | Last updated: 07/04/08 @ 13:54:04
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Attributions: License: Creative Commons Attribution 3.0 Unported License
Use the local java plugins and some filtering operations to fetch the comic strip image from http://xkcd.com/
Based on the FetchDailyDilbert workflow.
Rating: 4.5 / 5 (2 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 488 times | Downloaded: 179 times Tags (4): |
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Created: 05/03/08 @ 14:09:35 | Last updated: 14/07/10 @ 16:46:37
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License: Creative Commons Attribution 3.0 Unported License
Fetch images and annotations of snapdragons
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Created: 05/03/08 @ 14:10:51 | Last updated: 25/03/08 @ 14:40:27
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License: Creative Commons Attribution 3.0 Unported License
This workflow shows the use of the iteration strategy editor to ensure that only relevant combinations of inputs are used during an implicit iteration.
Rating: 4.0 / 5 (1 rating) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 276 times | Downloaded: 153 times Tags (5): |
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Created: 17/06/09 @ 16:51:32
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License: Creative Commons Attribution 3.0 Unported License
This workflow retrieves a sequence associated with its features in embl format
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Created: 05/03/08 @ 14:13:24 | Last updated: 31/03/08 @ 16:01:41
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License: Creative Commons Attribution 3.0 Unported License
Given an identifier such as '1crn' fetches the PDB format flatfile and returns the corresponding 3D image of the protein.
Rating: 3.0 / 5 (1 rating) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 288 times | Downloaded: 109 times Tags (8): |
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Created: 05/03/08 @ 14:15:35 | Last updated: 31/03/08 @ 15:55:09
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License: Creative Commons Attribution 3.0 Unported License
This workflow retrieves nucleotide and protein sequences with the literature and references associated
to them given a protein and a nucleotide id.
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Pack
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Created: 17/07/08 @ 21:06:12 | Last updated: 05/03/12 @ 11:32:10
Everything to get started with Taverna 1.7 - latest version is 1.7.2
16 items in this pack Comments: 0 | Viewed: 550 times | Downloaded: 206 times Tags: |
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File
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Created: 25/09/08 @ 15:00:28
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
Example file containing GenBank data so that it can be used for example Taverna workflows
File type: Plain text Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 31 times | Downloaded: 36 times This File has no tags! |
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Created: 25/09/08 @ 15:09:03
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
Example SwissProt data to be used for Taverna examples.
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Created: 26/09/08 @ 12:12:41
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
XML file to be used for example workflows
File type: XML Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 79 times | Downloaded: 246 times This File has no tags! |
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Created: 26/09/08 @ 12:13:31
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
XSLT file to be used for example workflows
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Pack
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Created: 29/09/08 @ 11:57:45 | Last updated: 29/09/08 @ 13:34:14
The pack contains a number of test workflows i built when i'm annotating web services.
The workflows (one or two services) have all example parameters.
Cool, now you can test some web services before add them to your workflows.
Do you have any workflows you built to test a service? please add them to the pack.
List of myGrid annotated web services: http://www.mygrid.org.uk/feta/mygrid/descriptions/
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Created: 29/09/08 @ 13:28:02 | Last updated: 08/10/08 @ 16:37:49
The pack contains a number of test workflows for kegg web service (and operations)
14 items in this pack Comments: 0 | Viewed: 228 times | Downloaded: 41 times Tags: |
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Created: 15/09/09 @ 15:05:11
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Attributions:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
This is the Taverna 2 version of the Biomart and Emboss Analysis workflow
http://www.myexperiment.org/workflows/158
Using Biomart and EMBOSS soaplab services, This workflow retrieves a number of sequences from 3 species: mouse, human, rat; align them, and returns a plot of the alignment result. Corresponding sequence ids are also returned.
Previous versions of this workflow only returned sequences with an ID mapped to a MIM_morbid_accession. This was primarily to reduce the numbe...
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 292 times | Downloaded: 85 times Tags (5): |
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Workflow
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Created: 04/08/11 @ 14:18:09
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
If the input is true then the string 'foo' is emited, if false then 'bar'. Just a simple example to show how the monster works, so to speak.
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 21 times | Downloaded: 5 times Tags (1): |
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