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Items tagged with "e-science" (17)
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Original Uploader |
Created: 16/05/09 @ 01:06:26 | Last updated: 16/05/09 @ 01:13:18
Credits:
License: Creative Commons Attribution-No Derivative Works 3.0 Unported License
This workflow is for demonstration purposes only. Please contact the authors if you wish to try it. We will gladly collaborate with you.
Summary
This workflow extracts proteins and protein relations from Medline. Extracted protein names (symbols of at least 3 characters) are validated against mouse, rat, and human UniProt symbols, so the results are limited to these species. This workflow follows the following basic steps:
it retrieves documents relevant for the query string
i...
Rating: 0.0 / 5 (0 ratings) | Versions: 7 | Reviews: 0 | Comments: 1 | Citations: 0 Viewed: 149 times | Downloaded: 31 times Tags (10): |
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Original Uploader |
Created: 26/04/11 @ 08:31:51 | Last updated: 26/04/11 @ 08:31:52
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow adds meaning to gene expresion values by performing a standard and a literature weighted Global Test. Gene expression is expected to be from Affymetrix microarrays, for which an RMA normalization and entrez Gene ID mapping/summation is performed.
Original workflow is by Dennis Leenheer, edits by Marco Roos. Scripts by Kristina Hettne, acknowledging Rob Jellier, Jelle Goeman, and Peter-Bram 't Hoen.
The workflow was created for the LUMC BioSemantics group, part of the Human Gen...
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 29 times | Downloaded: 0 times Tags (8): |
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Created: 01/08/08 @ 10:52:42 | Last updated: 01/08/08 @ 12:06:07
Pack of tools and software components that can be used to enhance your research.
'e-science' characteristics:
interoperabie with other tools
free to use by academics
components can be shared and reused, potentially for other means
stimulating sharing and reusing components
1 item in this pack Comments: 0 | Viewed: 82 times | Downloaded: 15 times Tags: |
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Created: 01/08/08 @ 11:33:03 | Last updated: 14/02/10 @ 16:04:25
Adaptive Information Disclosure Application toolbox:
AIDA web services for automated knowledge extraction and knowledge management
Documentation
9 items in this pack Comments: 0 | Viewed: 179 times | Downloaded: 21 times Tags: |
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Created: 14/12/08 @ 21:35:43 | Last updated: 01/05/09 @ 17:35:26
Pack with AIDA demo material
5 items in this pack Comments: 0 | Viewed: 119 times | Downloaded: 0 times Tags: |
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Created: 15/05/09 @ 15:45:32 | Last updated: 11/08/11 @ 10:01:23
Supporting material for BMC Bioinformatics, supplement for Semantic Web Applications and Tools for Life Science (2009)
Structuring and extracting knowledge for the support of hypothesis generation in molecular biology
Marco Roos, M. Scott Marshall, Andrew P. Gibson, Martijn Schuemie, Edgar Meij, Sophia Katrenko, Willem Robert van Hage, Konstantinos Krommydas, Pieter W. Adriaans
Acknowledgements
We thank the myGrid team and OMII-UK for their support in applying their e-Science tools, and M...
5 items in this pack Comments: 0 | Viewed: 41 times | Downloaded: 15 times Tags: |
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Created: 15/05/09 @ 16:08:03 | Last updated: 15/05/09 @ 16:11:20
Runners for AIDA demonstrations and testing
2 items in this pack Comments: 0 | Viewed: 16 times | Downloaded: 7 times Tags: |
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Unique name: myGrid Created: Friday 30 November 2007 @ 12:19:26 (GMT)
People working or contributing to the myGrid project, including the Taverna developers.
You do not need to join this group to see the shared items. If you are interested in contributing to myGrid or Taverna development or have questions about Taverna, then please email support@mygrid.org.uk
300 shared items | 0 announcements Members (17): Tags: |
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Unique name: eScienceSupportTeam4NBIC Created: Sunday 16 March 2008 @ 22:23:11 (GMT)
This group brings together scientists with expertise in both (medical) bioinformatics and e-science. The members can give advice to bioinformaticians who want to adopt an 'e-science approach'. They want to share their expertise and experience for the application of technologies such as workflow, web/biomoby services, grid, semantic web, etcetera.
The group was founded in particular for the Du...
3 shared items | 0 announcements Members (11): Tags: |
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Created: Tuesday 03 June 2008 @ 09:46:58 (GMT)
Group for sharing bioinformatics tools that can enhance life science research.
3 shared items | 0 announcements Members (4): Tags: |
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Created: Friday 22 August 2008 @ 10:49:27 (GMT)
Group for collaboration of Andy, Scott, and Marco.
5 shared items | 1 announcements Members (4): Tags: |
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Unique name: myexperiment Created: Monday 23 July 2007 @ 17:02:58 (GMT)
This is the official group for the myExperiment team
6 shared items | 0 announcements Members (18): Tags: |
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Unique name: CWA_ContentCapture Created: Tuesday 01 September 2009 @ 13:06:04 (GMT)
Concept Web Alliance working group on content capture
CWA wants to help disclose experiment-derived knowledge from within the scientific community via concepts and relations between concepts, stored as concept-relation-concept triples that together form a 'nano-publication'. A nano-publication contains a single 'unit of though', and minimal provenance about who made it, where it was stated, ho...
1 shared item | 1 announcements Members (12): Tags: |
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Unique name: LeidenBioSemanticsUsers Created: Wednesday 23 September 2009 @ 01:10:24 (GMT)
Group of colleagues at the Human Genetics Department of the Leiden University Medical Centre and closely collaborating groups who are interested to be prime users of new developments in BioSemantics and e-Science, and in return are willing to provide feedback and suggestions. See http://biosemantics.org for more information about the BioSemantics collaboration in the Netherlands.
3 shared items | 1 announcements Members (10): Tags: |
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Unique name: teambncl Created: Wednesday 10 March 2010 @ 18:39:50 (GMT)
MyExperiment Group for the Team Baywatch (Solutions).
Newcastle University, 2010 MSc Bioinformatics e-Science Group B.
2010 Prize Winners!!!
10 shared items | 1 announcements Members (6): Tags: |
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Created: Wednesday 16 March 2011 @ 10:43:40 (GMT)
This group contains workflows and other resources for the Bonn e-Science workshop.
Use this space for sharing with other members of the group.
Finished workflow 'solutions' will also be posted here as the course progresses
32 shared items | 0 announcements Members (14): Tags: |
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Uploader: |
Created: 21/03/08 @ 19:00:12 | Last updated: 23/03/08 @ 10:39:27
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
A movie to show the principle of the round trip from a biology question via pieces of code wrapped as web services and combined into a workflow (computational experiment) in Taverna, via uploading to myExperiment and back to the biologist through myExperiment's run facility. NB: at the time of uploading this movie the runner-option was in test-phase.
It is important to note that the workflow combines the work of various scientists with different expertise and some at remote locations around ...
File type: AVI video Rating: 1.0 / 5 (1 rating) | Comments: 1 | Viewed: 261 times | Downloaded: 244 times Tags: |
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