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Blob Kegg Gene Identifiers

Created: 2009-11-14 16:29:01

Credits: User George

License: Creative Commons Attribution-Share Alike 3.0 Unported License

An example file of a list of Kegg gene identifiers used to test searching the Kegg database.

File type: Plain text

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Blob Pubmed Identifiers

Created: 2009-11-14 16:23:47

Credits: User George

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A list of example pubmed identifers to use when testing abstract retrieval and text-mining workflows

File type: Plain text

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Blob Very simple script to fix pathway commons biopax files

Created: 2009-11-04 11:05:46

Credits: User Andrea

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This very simple script (it only replace one type of ID!) will fix BioPAX files coming from PathwayCommons. In this files, rdf:ID is used instead of rdf:about, and since these files contains repetition, this results in an error in strict parsers. This error gets undetected in many system as they disable replicated ID checking for performance, but it's still a problem in some.

File type: application/x-perl

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Blob KEGG Compounds to Inchi strings

Created: 2009-11-02 16:15:39 | Last updated: 2009-11-02 16:15:57

Credits: User Paul Fisher User Paul Dobson

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This file contains a list of KEGG compounds which are reffered to by their Inchi strings.

File type: Chemistry Plan

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Blob The general plan and guidelines for BioAssist from O...

Created: 2009-10-26 10:15:03

Credits: User Barend

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This document has been accepted at the NBIC management team meeting of 22 October 2009, and will serve as ageneral guideline to run the BioAssist program of NBIC. It might be a good idea to read the short document before you contact BioAssist for support in the scope of your 'code' or 'content' interests. Barend Mons

File type: application/x-download

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Blob nano publication as a way to explain rich triples

Created: 2009-10-23 07:32:36 | Last updated: 2009-10-25 20:38:34

Credits: User Barend User Jan Velterop Network-member Concept Web Alliance (general)

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This paper can be used to explain what triples in our context are meant to be and to serve I will present the paper on the semantic web conference workshop 26th of November

File type: application/x-download

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Blob Ondex and Taverna Tutorial

Created: 2009-10-22 13:50:53 | Last updated: 2009-10-22 13:51:51

Credits: User George

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Biological Data Integration Using Ondex and Taverna: A Tutorial 25/26th November 2009 The University of Manchester The Ondex SABR project (http://ondex.org/sabr.html) invite you to a two-day tutorial that aims to show participants how to use Ondex and Taverna to perform common biological data collection, integration and visualisation tasks.

File type: Word document

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Blob Physical Contiguism

Created: 2009-10-18 05:28:32

Credits: User M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

The topic of physical contiguism is proposed in description to bridge paradoxes of mind and matter.  It seems that in efforts to bridge topics of science and consciousness focus has drifted towards a means to accommodate the mind in physical terms in order to draw correspondances with the more readily studied topic of matter. – i.e. as a topic in brain science. 

File type: Adobe PDF

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Blob The Bend : A Speculation on History and Science

Created: 2009-09-20 04:08:33

Credits: User M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

The age of human civilization is given the name “the bend” based on a re-examination of the emergence of science, science theory content, and history.</font></font>  Civilization, existing over its course, in  darkness to the  nature of its partnership with the elements, oscillates in a romance that alternates between logical explanation, the rational, and illogical as they are  presented to him from the external. Its&rsquo...

File type: Adobe PDF

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Blob GeoClouds workshop talk

Created: 2009-09-18 13:58:14

Credits: User Paolo User David De Roure User Carole Goble User David R Newman

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Indianapolis, IN, Sept 17, 2009 www.dataandsearch.org/dsi/events/geoclouds.html

File type: application/x-zip

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