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Items tagged with "workflow" (63)

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Workflows (56)

Taverna 1 Original Uploader Antoon Goderis	1 (v2) Created: 06/11/07 @ 16:59:05 \| Last updated: 20/11/07 @ 16:18:31 Credits: Antoon Goderis Carole Goble A. Random Scientist try it out Attributions: License: Creative Commons Attribution-Share Alike 3.0 Unported License Trivial workflow which will initially fail, retry twice then fall over to the alternative specified for the FailingThing process. Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 176 times \| Downloaded: 91 times Tags (5): example \| illustration \| thesis \| thesis illustration workflow \| workflow	View Download (v2)
Taverna 2 Original Uploader Paolo	Taverna rendering of the PAN-STARRS workflow for Provenance Challenge 3 (v1) Created: 30/04/09 @ 16:32:17 Credits: Paolo License: Creative Commons Attribution-Share Alike 3.0 Unported License Example inputs: CSVRootPath = /Users/paolo/Documents/myGRID/OPM/PC3/SampleData/J062941 JobID:J062941 Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 77 times \| Downloaded: 45 times Tags (1): workflow	View Download (v1)
Taverna 1 Original Uploader Wassinki	Test SoapLab Service Availability (v1) Created: 29/05/09 @ 10:13:45 \| Last updated: 29/05/09 @ 10:14:47 Credits: Wassinki License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow tests for all Taverna workflows stored at myExperiment wether theS oapLab services used still exists. For each SOAP/WSDL service it checks wether the SoapLab service can still be accessed. The output is among others a report of accessible SoapLab services inaccessible SoapLab services Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 43 times \| Downloaded: 29 times Tags (3): services \| workflow \| workflows	View Download (v1)
Taverna 1 Original Uploader Wassinki	Test SOAP/WSDL Service Availability (v1) Created: 29/05/09 @ 10:15:41 Credits: Wassinki License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow tests for all Taverna workflows stored at myExperiment wether the SOAP/WSDL services used still exists. For each SOAP/WSDL service it checks wether the WSDL file is still accessible and whether the operation is still exists. The output is among others a report of accessible services and operation, operations which WSDL file is not accessible, operations which WSDL file still exists, but the operation is not defined anymore. The last set needs to be checked by hand, because... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 102 times \| Downloaded: 48 times Tags (4): myexperiment \| services \| workflow \| workflows	View Download (v1)
Taverna 2 Original Uploader cory (Kazuki Oshita)	G-language Genome Analysis Environment - Basic statistics on a numerical vector (v2) Created: 05/04/10 @ 06:15:53 Credits: cory (Kazuki Oshita) License: Creative Commons Attribution-Share Alike 3.0 Unported License Given a numerical vector (array), this workflow calculates the maximum value (max) and its index (maxdex), minumum value (min) and its index (mindex), mean, sum, median, and standard deviation. See http://www.g-language.org/ for more information about the G-language Genome Analysis Environment. Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 32 times \| Downloaded: 19 times Tags (5): g-language \| index \| statistics \| vector \| workflow	View Download (v2)
Taverna 2 Original Uploader cory (Kazuki Oshita)	G-language Genome Analysis Environment - GC skew analysis (basic) (v2) Created: 05/04/10 @ 06:20:58 Credits: cory (Kazuki Oshita) License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow calculates and graphs the GC skew of a given genome sequence. Use this as a template for using more than 100 analysis programs implemented in G-language Genome Analysis Environment, which can be used in a similar manner. See http://www.g-language.org/ for more information about the G-language Genome Analysis Environment. Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 40 times \| Downloaded: 19 times Tags (5): analysis \| g-language \| genome \| sequence \| workflow	View Download (v2)
Taverna 2 Original Uploader cory (Kazuki Oshita)	G-language Genome Analysis Environment - GC skew analysis (sequence retrieval via togoWS) (v2) Created: 05/04/10 @ 06:24:02 Credits: cory (Kazuki Oshita) License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow calculates and graphs the GC skew (by default, for keto bases, with window size of 1000) of a given genome sequence identifier. Here the genome sequence in Fasta format is downloaded through the Togo Web Service with RefSeq identifier. See http://www.g-language.org/ for more information about the G-language Genome Analysis Environment. Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 47 times \| Downloaded: 35 times Tags (5): analysis \| g-language \| genome \| sequence \| workflow	View Download (v2)
Taverna 2 Original Uploader cory (Kazuki Oshita)	G-language Genome Analysis Environment - Basic sequence manipulations (v2) Created: 05/04/10 @ 06:13:16 \| Last updated: 05/04/10 @ 06:13:17 Credits: cory (Kazuki Oshita) License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow shows simple sequence manipulation functions of G-language GAE, such as random shuffling, obtaining a reverse complement, and translation of nucleotide sequences, and showing basic composition statistics for nucleotide and amino acid sequences. See http://www.g-language.org/ for more information about the G-language Genome Analysis Environment. Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 23 times \| Downloaded: 18 times Tags (5): g-language \| nucleotide \| sequence \| translation \| workflow	View Download (v2)
Taverna 2 Original Uploader cory (Kazuki Oshita)	G-language Genome Analysis Environment - GC skew analysis (multiple) (v2) Created: 05/04/10 @ 06:22:28 Credits: cory (Kazuki Oshita) License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow calculates and graphs the GC skew of a given genome sequence (for the entire genome, for only the coding sequences, for only the intergenic regions, and for only the third codon positions), as well as the GC content with sliding windows. See http://www.g-language.org/ for more information about the G-language Genome Analysis Environment. Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 29 times \| Downloaded: 25 times Tags (5): analysis \| g-language \| genome \| sequence \| workflow	View Download (v2)
Taverna 2 Original Uploader cory (Kazuki Oshita)	G-language Genome Analysis Environment - GC skew analysis (AT skew) (v3) Created: 05/04/10 @ 06:17:25 \| Last updated: 09/01/11 @ 06:08:19 Credits: cory (Kazuki Oshita) License: GNU General Public License (GPL) 2.0 This workflow calculates and graphs the AT skew of a given genome sequence, using options of gcskew program. See http://www.g-language.org/ for more information about the G-language Genome Analysis Environment. Rating: 0.0 / 5 (0 ratings) \| Versions: 3 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 31 times \| Downloaded: 21 times Tags (5): analysis \| g-language \| genome \| sequence \| workflow	View Download (v3)
Taverna 2 Original Uploader cory (Kazuki Oshita)	G-language Genome Analysis Environment - Student's T-test and Pearson/Spearman correlations (v2) Created: 05/04/10 @ 06:26:41 Credits: cory (Kazuki Oshita) License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow calculates the Student's T-test and Pearson/Spearman correlations. See http://www.g-language.org/ for more information about the G-language Genome Analysis Environment. Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 47 times \| Downloaded: 23 times Tags (4): g-language \| statistics \| vector \| workflow	View Download (v2)
Taverna 2 Original Uploader cory (Kazuki Oshita)	G-language Genome Analysis Environment - Reading manuals (v2) Created: 30/03/10 @ 10:58:18 \| Last updated: 30/03/10 @ 11:19:03 Credits: cory (Kazuki Oshita) License: GNU General Public License (GPL) 2.0 This workflow displays a documentation of G-language GAE programs. If you input the "keywords", this workflow searches for the keyword through the documentations. See http://www.g-language.org/ for more information about the G-language Genome Analysis Environment. Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 44 times \| Downloaded: 22 times Tags (4): g-language \| information \| manual \| workflow	View Download (v2)
Taverna 2 Original Uploader Stian Soiland-Reyes	Biomart and EMBOSS analysis (v1) Created: 03/07/09 @ 14:18:28 \| Last updated: 03/07/09 @ 14:19:32 Credits: Stian Soiland-Reyes Attributions: BiomartAndEMBOSSAnalysis License: Creative Commons Attribution-Share Alike 3.0 Unported License Using Biomart and EMBOSS soaplab services, This workflow retrieves a number of sequences from 3 species: mouse, human, rat; align them, and returns a plot of the alignment result. Corresponding sequence ids are also returned. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 86 times \| Downloaded: 23 times Tags (6): alignment \| analysis \| sequence \| services \| soaplab \| workflow	View Download (v1)
Taverna 2 Original Uploader Mark Wilkinson	DataBiNS with Kegg ID (v3) Created: 09/07/09 @ 21:39:54 \| Last updated: 22/11/10 @ 23:16:42 Credits: Mark Wilkinson Fong Chun Chan License: Creative Commons Attribution-Share Alike 3.0 Unported License Consumes a KEGG gene id and mines for pathway, GO, PubMed and SNP information about that gene Rating: 5.0 / 5 (2 ratings) \| Versions: 3 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 152 times \| Downloaded: 107 times Tags (8): information \| nssnp \| nucleotide \| OMIM \| pathway \| snp \| structure \| workflow	View Download (v3)
Taverna 1 Original Uploader Angela Luijf	DNA sequence analysis pilot (v1) Created: 10/07/09 @ 14:31:27 \| Last updated: 30/11/09 @ 09:37:38 Credits: Angela Luijf Glatard License: Creative Commons Attribution-No Derivative Works 3.0 Unported License http://amc-app1.amc.sara.nl/twiki/bin/view/ Workflow-based DNA sequence analysis on the Dutch Life Science Grid, presented as Application Showcase at the NBIC Conference 2009, Lunteren, The Netherlands, 17 & 18 March 2009. http://www.biomedgrid.it/programme may 15th 2009. Hands on workflow: grid-enabled medical imaging (Johan Montagnat – Tristan Glatard) Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 1 \| Citations: 0 Viewed: 335 times \| Downloaded: 46 times Tags (5): grid \| moteur \| sequence \| taverna 1 \| workflow	View Download (v1)
Taverna 2 Original Uploader Mventosa	Ex (v1) Created: 16/11/09 @ 12:37:25 Credits: Mventosa Attributions: EBI_InterProScan for Taverna 2 License: Creative Commons Attribution-Share Alike 3.0 Unported License Ex of exercise Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 43 times \| Downloaded: 0 times Tags (3): FASTA \| tutorial exercise \| workflow	View
Taverna 1 Original Uploader Angela Luijf	DNA sequence analysis pilot (Blat) (v2) Created: 20/11/09 @ 11:12:43 \| Last updated: 30/11/09 @ 09:35:38 Credits: Angela Luijf Barbera van Schaik Glatard Attributions: DNA sequence analysis pilot License: Creative Commons Attribution-Share Alike 3.0 Unported License http://amc-app1.amc.sara.nl/twiki/bin/view/ Workflow-based DNA sequence analysis on the Dutch Life Science Grid. This workflow is based on http://www.myexperiment.org/workflows/840 , the last component (Blast analysis) is replaced by Blat analysis Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 84 times \| Downloaded: 22 times Tags (7): analysis \| DNA \| grid \| moteur \| sequence \| taverna 1 \| workflow	View Download (v2)
Taverna 2 Original Uploader Charala...	Angiogenesis Feature Extraction workflow (v3) Created: 23/03/10 @ 13:19:35 \| Last updated: 10/01/12 @ 08:47:41 Credits: Charalampos License: Creative Commons Attribution-Share Alike 3.0 Unported License No description Rating: 0.0 / 5 (0 ratings) \| Versions: 3 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 203 times \| Downloaded: 54 times Tags (4): angiogenesis \| image feature extraction \| image mining \| workflow	View Download (v3)
Taverna 2 Original Uploader cory (Kazuki Oshita)	G-language Genome Analysis Environment - Bacteria Analysis System (v2) Created: 05/04/10 @ 06:08:25 \| Last updated: 05/04/10 @ 06:08:26 Credits: cory (Kazuki Oshita) License: GNU General Public License (GPL) 2.0 Given an identifier for genome sequence (by default, genome of Mycoplasma genitalium: refseq:NC_000908) or raw sequence data in FASTA format, this workflow calculates and graphs the following properties using the G-language Genome Analysis Environment: GC skew (gcskew), cumulative GC skew (gcskew_cumulative), GC skew of coding/intergenic/GC3 (genomicskew), GC content with sliding windows (gcwin), replication origin and terminus (find_ori_ter), codon usage table (codon_usage), the Codon Adapta... Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 58 times \| Downloaded: 42 times Tags (5): FASTA \| g-language \| genome \| sequence \| workflow	View Download (v2)
Taverna 2 Original Uploader Nadia Cerezo	Get KEGG gene descriptions and pathways (v1) Created: 30/04/10 @ 16:09:29 \| Last updated: 30/04/10 @ 16:12:02 Credits: Nadia Cerezo Paul Fisher Attributions: Get Kegg Gene information License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow takes a list of KEGG gene identifiers and supplies descriptions associated to said genes + pathways including all genes and the descriptions associated to said pathways. The list_to_string local beanshell scripts merely transform a given list into a string of unique not-null elements separated by new lines (for batch btit use). Note that the input is a real taverna list : multiple values must be declared as multiple values instead of a single string value with distinct identif... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 393 times \| Downloaded: 25 times Tags (11): gene \| gene identifier \| genes \| information \| kegg \| Kegg Pathways \| KeggID \| pathway \| pathways \| taverna \| workflow	View Download (v1)
BioExtract Server Original Uploader Kendra Giesey	Phylogenetic Study Using the Bio Extract Server (v2) Created: 17/06/10 @ 16:34:50 \| Last updated: 19/07/10 @ 20:00:00 Credits: Kendra Giesey BioExtract Server for Genomics License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow, created using the BioExtract Server, contains a nucleotide query (using the NCBI Core Nucleotide Database), Blastn (against the Homo sapiens genome), Blastn (against the Mus musculus genome), the Format Conversion tool, the Fetch Translator Tool, and ClustalW. This workflow was created following the analytical steps described in the journal article "Resolution among major placental mammal interordinal relationships with genome data imply that speciation influenced the... Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 1 Viewed: 76 times \| Downloaded: 42 times Tags (4): distance \| genome \| nucleotide \| workflow	View Download (v2)
BioExtract Server Original Uploader Kendra Giesey	Protein Mutation Analysis Using the BioExtract Server (v1) Created: 22/07/10 @ 20:20:07 \| Last updated: 22/07/10 @ 20:29:56 Credits: Kendra Giesey Yosr Bouhlal BioExtract Server for Genomics License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow, created using the BioExtract Server, contains a protein query (using the NCBI Protein Database), Blastp, ClustalW, Transeq, Garnier, PepWindowWall, PepInfo, and Octanol. For this workflow, a mutated protein sequence needs to be selected. Once the corresponding non-mutated sequence has been queried, the Blastp tool can be used to find sequences similar to the one queried, and the ClustalW tool can be used to analyze whether the mutation is conserved within species. The Tra... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 1 Viewed: 45 times \| Downloaded: 21 times Tags (3): bioextract \| mutation \| workflow	View Download (v1)
Trident (Package) Original Uploader Vinay TC	For loop sample for Trident v1.2 (v1) Created: 19/08/10 @ 18:29:19 \| Last updated: 24/08/10 @ 17:27:34 Credits: Trident License: Creative Commons Attribution-Share Alike 3.0 Unported License Please refere following link for more information http://tridentworkflow.codeplex.com/Project/Download/FileDownload.aspx?DownloadId=138916 Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 27 times \| Downloaded: 13 times Tags (9): for \| forloop \| loop \| programming \| sample \| samples \| trident \| trident v1.2.1 \| workflow	View Download (v1)
Trident (Package) Original Uploader Vinay TC	Replicator Activity sample for Trident v1.2 (v1) Created: 03/09/10 @ 09:00:59 \| Last updated: 03/09/10 @ 09:04:01 Credits: Trident License: Creative Commons Attribution-Share Alike 3.0 Unported License The objective of this workflow is to explain the working of the Replicator activity in the Trident application. For detailed description of the worklfow please refer the following document. Sample Description Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 12 times \| Downloaded: 19 times Tags (7): programming \| replicator \| sample \| samples \| trident \| trident v1.2.1 \| workflow	View Download (v1)
Trident (Package) Original Uploader Vinay TC	IfEls Activity sample for Trident v1.2 (v1) (v1) Created: 03/09/10 @ 10:53:39 \| Last updated: 03/09/10 @ 10:53:43 Credits: Trident License: Creative Commons Attribution-Share Alike 3.0 Unported License The objective of this workflow is to explain the working of the If Else activity in the Trident application. For more information on how to use the if else sample. Please refere the following document. IfElse-Sample Details Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 16 times \| Downloaded: 9 times Tags (7): ifelse \| programming \| sample \| samples \| trident \| trident v1.2.1 \| workflow	View Download (v1)
Trident (Package) Original Uploader Vinay TC	Sample for explaining the feature: - Type initializer (v1) Created: 03/09/10 @ 11:05:13 \| Last updated: 03/09/10 @ 11:05:16 Credits: Trident License: Creative Commons Attribution-Share Alike 3.0 Unported License The objective of this workflow is to explain the working of the Type Initializer in the Trident application. For detailed information on type initializer and how it can be used please refer the following document:- http://tridentworkflow.codeplex.com/Project/Download/FileDownload.aspx?DownloadId=138922 Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 23 times \| Downloaded: 8 times Tags (5): programming \| sample \| trident \| trident v1.2.1 \| workflow	View Download (v1)
BioExtract Server Original Uploader Yosr Bouhlal	Phylogenetic analysis workflow (v1) Created: 12/03/11 @ 07:10:59 \| Last updated: 12/03/11 @ 07:12:22 Credits: Yosr Bouhlal License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow provides a simple phylogenetic analysis starting from a protein query using "MrBayes" program and according to the maximum likelihood model Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 23 times \| Downloaded: 16 times Tags (7): analysis \| phylogeny \| protein \| workflow	View Download (v1)
Taverna 2 Original Uploader Dennis Leenheer	[untitled] (v1) Created: 26/04/11 @ 14:50:37 \| Last updated: 26/04/11 @ 15:04:28 Credits: Dennis Leenheer License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow allows the user to search for processes that are involved with a certain gene. Using microarray-files (CEL-files), consisting of wild type and KO mice to which a stimulant is induced, the user can get an idea of the processes involved. (This is done using the global test and the literature weighted global test.) The results are then given as a text-file. Warning: workflow is not working (needs some revisions), all input is currently hardcoded! (You will have to change the file... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 15 times \| Downloaded: 9 times Tags (16): bioinformatics \| biosemantics \| datamining \| global test \| GO \| kegg \| literature weighted global test \| mapping \| normalization \| rma \| sommation \| taverna \| taverna 2 \| textmining \| weighted global test \| workflow	View Download (v1)
Taverna 2 Original Uploader Kalai	Generate Atom Signatures of molecules given SDF as input (v1) Created: 13/05/11 @ 17:14:06 \| Last updated: 13/05/11 @ 19:47:24 Credits: Kalai License: Creative Commons Attribution-Share Alike 3.0 Unported License Reference: Natural Product-likeness Score and Its Application for Prioritization of Compound Libraries Peter Ertl,* Silvio Roggo, and Ansgar Schuffenhauer Novartis Institutes for BioMedical Research, CH-4002 Basel, Switzerland http://peter-ertl.com/reprints/Ertl-JCIM-48-68-2008.pdf The natural product likeness scorer implemented by Peter Ertl was originally devised to screen large compound libraries for natural product likeness in drug designing studies. His work is re... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 46 times \| Downloaded: 19 times Tags (22): bioinformatics \| cdk \| cdk-taverna \| chemoinformatics \| compound \| curation \| drug \| ebi \| example \| filter \| filtering \| metabolism \| metabolite-likeness \| metabolomics \| natural \| open science \| open source \| re-use \| synthetic \| taverna 2 \| workflow \| workflows	View Download (v1)
Taverna 2 Original Uploader Kalai	Scoring small molecules for metabolite likeness/ Natural product likeness (v2) Created: 13/05/11 @ 17:22:28 \| Last updated: 18/03/12 @ 16:41:39 Credits: Kalai License: Creative Commons Attribution-Share Alike 3.0 Unported License Prerequisite: - CDK -Taverna Plugin 0.5.1 http://www.ts-concepts.de/cdk-taverna2/plugin/ - To run this workflow the atom_signatures file of Natural product(NP), Synthetic Molecules(SM) and query structures are needed - This could be generated from GenerateAtomSignatures.t2flow http://www.myexperiment.org/workflows/2120/download?version=1 Description of input ports : NP_file: needs precomputed Atom_signatures of desired Natural product structu... Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 66 times \| Downloaded: 16 times Tags (22): bioinformatics \| cdk \| cdk-taverna \| chemoinformatics \| compound \| curation \| drug \| ebi \| example \| filter \| filtering \| metabolism \| metabolite-likeness \| metabolomics \| natural \| open science \| open source \| re-use \| structure \| synthetic \| workflow \| workflows	View Download (v2)
Taverna 2 Original Uploader Kalai	Plotting distribution of natural product likeness scores (v1) Created: 13/05/11 @ 17:34:58 \| Last updated: 13/05/11 @ 17:35:08 Credits: Kalai License: Creative Commons Attribution-Share Alike 3.0 Unported License Prerequisite: CDK -Taverna Plugin 0.5.1 http://www.ts-concepts.de/cdk-taverna2/plugin/ - To run this workflow you need a Score file which is written to text file. - This could be generated from ScorerActivity.t2flow http://www.myexperiment.org/workflows/2121/download?version=1 Description of input ports : score_file: Path to file name that has pre computed scores. Note: While passing file as input it could be passed as list of many files or single fi... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 31 times \| Downloaded: 13 times Tags (24): bioinformatics \| cdk \| cdk-taverna \| chemoinformatics \| compound \| curation \| drug \| ebi \| example \| filter \| filtering \| metabolism \| metabolite-likeness \| metabolomics \| natural \| open science \| open source \| plot \| re-use \| structure \| synthetic \| taverna2 \| workflow \| workflows	View Download (v1)
Taverna 2 Original Uploader Kalai	Download Structures from PubChem given chemical names (v1) Created: 24/05/11 @ 13:13:52 \| Last updated: 24/05/11 @ 14:19:24 Credits: Kalai Michael Gerlich Attributions: Download Entries from PubChem License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow takes the input file containing chemical names and returns a single SDF file of structures. The names are searched against pubchem compounds via e-search. If the compound name is found an XML file containing PubChem ID is returned.The max return compound_ID is set to 1 which could be increased. If the compound name is not found then no ID is returned. The pubchem compound_ID is then used to download structures from PubChem. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 39 times \| Downloaded: 19 times Tags (26): bioinformatics \| cheminformatics \| compound \| data \| download file \| esearch \| eutils \| file \| list \| ncbi \| open science \| open source \| pccompound \| split \| string \| structure \| structure retrieval \| synthetic \| taverna 2 \| taverna2 \| url2list \| workflow \| workflows \| wsdl \| xml \| xpath	View Download (v1)
KNIME Original Uploader Baj	Bash example from the NGS community contributions (v1) Created: 07/06/11 @ 15:44:41 Credits: Baj License: Creative Commons Attribution-Share Alike 3.0 Unported License BASH Simple workflow that executes "ls" on the command line in the directory "/". Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 27 times \| Downloaded: 16 times Tags (1): workflow	View Download (v1)
KNIME Original Uploader Baj	NGS sample workflow with data (v1) Created: 24/06/11 @ 11:42:57 \| Last updated: 24/06/11 @ 12:17:00 Credits: Baj License: Creative Commons Attribution-Share Alike 3.0 Unported License Sample workflow for NGS data analysis This worklfow relies on community contributions that can be installed through the following update site: http://tech.knime.org/update/community-contributions/nightly specifically the KNIME NGS tools and the KNIME R Scripting extensions. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 136 times \| Downloaded: 36 times Tags (4): bioinformatics \| data \| sample \| workflow	View Download (v1)
BioExtract Server Original Uploader Carol Lushbough	tblastx non-redundant alignment (v1) Created: 30/06/11 @ 15:26:13 \| Last updated: 04/07/11 @ 16:51:41 Credits: Carol Lushbough License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow carries out alignments using TCoffee and ClustalW2 for a set of non-redundant proteins where the starting point is a particular genomic coding sequence representing only one member of the gene family in a given species. For the BioExtract Server implementation, the necessary steps for accomplishing this task involve: 1. Selecting the NCBI tblastx tool and providing the accession number of the known nucleotide sequence record as input. 2. The output from ... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 14 times \| Downloaded: 4 times Tags (7): alignment \| gene \| genomic \| proteins \| sequence \| species \| workflow	View Download (v1)
Document Original Uploader Liz Masterman	Rave Usability Lab Workflow (v1) Created: 16/08/11 @ 16:40:01 \| Last updated: 10/11/11 @ 16:08:49 Credits: Liz Masterman License: Creative Commons Attribution-Share Alike 3.0 Unported License Workflow created when writing UX requirements for mobile interface to myExperiment and renamed for use in the usability lab. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 17 times \| Downloaded: 0 times Tags (2): raveusability \| workflow	View
Taverna 2 Original Uploader Harvey	Image metadata extraction (v1) Created: 31/08/11 @ 12:02:29 \| Last updated: 31/08/11 @ 12:02:31 Credits: Harvey License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow invokes the gdalinfo service and will list various information about a GDAL supported raster dataset of the image ( GeoTIFF, PNG, JPEG and GIF.). Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 50 times \| Downloaded: 3 times Tags (7): gdalinfo \| genesi \| image \| metadata \| pywps \| workflow \| wps	View Download (v1)
Taverna 2 Original Uploader Harvey	TIFF to PNG (v1) Created: 31/08/11 @ 12:04:44 \| Last updated: 31/08/11 @ 12:04:47 Credits: Harvey License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow can convert Image format from TIFF to PNG. This workflow is one of the example for GENESI-DEC ontology. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 32 times \| Downloaded: 9 times Tags (8): convert \| genesi \| geotiff \| image \| pywps \| tif2png \| workflow \| wps	View Download (v1)
Taverna 2 Original Uploader Harvey	Convert GML to SVG (v1) Created: 31/08/11 @ 12:06:27 \| Last updated: 31/08/11 @ 12:06:31 Credits: Harvey License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow can convert the GML (Geography Markup Language) file to SVG image. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 32 times \| Downloaded: 19 times Tags (8): convert \| file \| genesi \| gml \| gml2svg \| pywps \| svg \| workflow	View Download (v1)
KNIME Original Uploader Pierre Lindenbaum	The NOTCH2 workflow (v1) Created: 06/09/11 @ 09:24:22 \| Last updated: 06/09/11 @ 09:26:48 Credits: Pierre Lindenbaum License: Creative Commons Attribution-Share Alike 3.0 Unported License Analysis of the exome sequencing data for the following article: Nat Genet. 2011 Mar 6;43(4):306-8. Truncating mutations in the last exon of NOTCH2 cause a rare skeletal disorder with osteoporosis. Isidor B, Lindenbaum P, Pichon O, Bézieau S, Dina C, Jacquemont S, Martin-Coignard D, Thauvin-Robinet C, Le Merrer M, Mandel JL, David A, Faivre L, Cormier-Daire V, Redon R, Le Caignec C. using knime4bio Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 47 times \| Downloaded: 28 times Tags (11): disease \| disease-associated genes \| exome \| ngs \| notch2 \| sequencing \| snp \| snv \| variation \| vcf \| workflow	View Download (v1)
Taverna 2 Original Uploader Gstalloch	World Population Density - IST 600 (v1) Created: 21/09/11 @ 05:51:09 \| Last updated: 21/09/11 @ 05:51:06 Credits: Gstalloch License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow fetches the details of the countries in the world and then uses R to produce a histogram of the log of their population. Based on "Population Histogram in R" by Alan R Williams Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 5 times \| Downloaded: 3 times Tags (5): histogram \| ist 600 \| plot \| population \| workflow	View Download (v1)
Taverna 2 Original Uploader Gstalloch	Avg and StdDev IST 600 (v1) Created: 21/09/11 @ 07:51:07 \| Last updated: 21/09/11 @ 07:51:04 Credits: Gstalloch License: Creative Commons Attribution-Share Alike 3.0 Unported License A workflow to calculate and name the average and standard deviation of a list of numbers. Changes made to the original workflow are: an inout and output, a concatenation to list the average and standard deviation outputs, a string constant to name the list, and a concatenation to string the name znd the calculations. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 4 times \| Downloaded: 3 times Tags (4): average \| ist 600 \| strings \| workflow	View Download (v1)
Taverna 2 Original Uploader Gstalloch	Fertilzer Use Ist 600 (v1) Created: 21/09/11 @ 08:52:43 \| Last updated: 21/09/11 @ 08:52:41 Credits: Gstalloch License: Creative Commons Attribution-Share Alike 3.0 Unported License Example using the SpreadsheetImport service to import data from an Excel spreadsheet. The workflow imports the file spreadsheet file FertilzerUse.xlsx and generates a graph from the date. The source data is from http://www.myexperiment.org/files/568/download/FertilizerUse.xls. Based on the water use workflow by David Withers Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 2 times \| Downloaded: 3 times Tags (4): graph \| ist 600 \| spreadsheet \| workflow	View Download (v1)
Taverna 2 Original Uploader Gstalloch	Broccoli production comparisons in NY and NJ between 1960 and 1965 Ist 600 (v1) Created: 21/09/11 @ 15:23:11 \| Last updated: 21/09/11 @ 15:23:08 Credits: Gstalloch License: Creative Commons Attribution-Share Alike 3.0 Unported License Example using the SpreadsheetImport service to import data from an Excel spreadsheet. The workflow imports the file spreadsheet file FertilzerUse.xlsx and generates a graph from the date. The source data is from http://www.myexperiment.org/files/568/download/FertilizerUse.xls. Based on the water use workflow by David Withers Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 4 times \| Downloaded: 4 times Tags (3): graph \| spreadsheet \| workflow	View Download (v1)
Mobyle Original Uploader Sebastien Carrere	Simple protein distance phylogeny workflow (v1) Created: 22/09/11 @ 16:47:46 \| Last updated: 22/09/11 @ 16:47:49 License: Creative Commons Attribution-Share Alike 3.0 Unported License Performs a multiple alignment and makes a phylogeny using a distance method on a set of protein sequences Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 17 times \| Downloaded: 13 times Tags (6): alignment \| distance \| phylogeny \| protein \| tree \| workflow	View Download (v1)
Kepler Original Uploader Gstalloch	Algebra 1 - IST 600 (v1) Created: 28/09/11 @ 07:00:03 \| Last updated: 28/09/11 @ 07:00:00 Credits: Gstalloch License: Creative Commons Attribution-Share Alike 3.0 Unported License A kepler workflow to solve the following problem: If x=3, solve for x: \|(x+5)/(x-5)\| Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 8 times \| Downloaded: 9 times Tags (3): algebra \| kepler \| workflow	View Download (v1)
Taverna 2 Original Uploader Gstalloch	Get 7 day weather information for selected zip codes. (v1) Created: 14/09/11 @ 05:46:28 \| Last updated: 14/09/11 @ 05:46:25 Credits: Gstalloch Franck Tanoh Attributions: Get weather information License: Creative Commons Attribution-Share Alike 3.0 Unported License Get the weather forcast of the day for you city. Info display: wind, visibility, temperature, sky conditions and pressure. The default value is my home town. To find out any supported city run the 'Get cities by country name' workflow Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 5 times \| Downloaded: 7 times Tags (4): cities \| ist 600 \| weather \| workflow	View Download (v1)
Kepler Original Uploader Gstalloch	Hipster Geek -IST 600 (v1) Created: 28/09/11 @ 06:54:14 \| Last updated: 28/09/11 @ 06:54:11 Credits: Gstalloch License: Creative Commons Attribution-Share Alike 3.0 Unported License A kepler workflow that concatenates 5 strings of random Hipster Geek from http://hipsteripsum.me/ into a word-wrapped paragraph. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 6 times \| Downloaded: 5 times Tags (5): hipster \| ist 600 \| kepler \| text output \| workflow	View Download (v1)
Kepler Original Uploader Gstalloch	Algebra 2 - IST 600 (v1) Created: 28/09/11 @ 07:16:30 \| Last updated: 28/09/11 @ 07:16:33 Credits: Gstalloch License: Creative Commons Attribution-Share Alike 3.0 Unported License A work flow that answers the following equation: If x=3, solve for x: \|(x-5)/(x+5)\| + \|(x+5)/(x-5)\| Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 7 times \| Downloaded: 9 times Tags (4): algebra \| ist 600 \| kepler \| workflow	View Download (v1)
Kepler Original Uploader Gstalloch	Convert a URL to an image - IST 600 (v1) Created: 28/09/11 @ 07:26:22 \| Last updated: 28/09/11 @ 07:26:26 Credits: Gstalloch License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow converts the Lackadaisy Cats comic to an image in Kepler. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 8 times \| Downloaded: 10 times Tags (7): comic \| image \| ist 600 \| kepler \| lackadaisy cats \| url \| workflow	View Download (v1)
Taverna 2 Original Uploader Chrisser	Elevation plot v.2 (v2) Created: 06/10/11 @ 03:54:30 \| Last updated: 06/10/11 @ 16:32:18 Credits: Chrisser License: Creative Commons Attribution-Share Alike 3.0 Unported License Functionally identical to the original. I tried to upload a version with annotation, but somehow the notes didn't make it to myExperiment. From the prior verion: This workflow accepts city and country names as user-supplied input. These value are supplied to the GetWeather webservice (http://www.webservicex.net/globalweather.asmx?WSDL), which returns an XML record of location and weather info for each recognized city. (See the uploaded photo "weather example") The XML returned fr... Rating: 5.0 / 5 (1 rating) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 10 times \| Downloaded: 5 times Tags (21): bar_chart \| elevation \| input \| ist600 \| latitude \| longitude \| netbeans \| plot \| r \| regex \| regular_expressions \| rest \| rest service \| string_constant \| string_wrangling \| weather \| web services \| web_retrieval \| web_services \| workflow \| wsdl	View Download (v2)
Taverna 2 Original Uploader tpacurtis	Mapping Service (v2) Created: 06/10/11 @ 04:44:03 \| Last updated: 06/10/11 @ 05:01:20 Credits: tpacurtis License: Creative Commons Attribution-Share Alike 3.0 Unported License This service generates a google map of a group of place names and coordinates. The workflow will accept both coordinates and place names. This workflow takes place names/coordinates from both a spreadsheet, as well as on-the-fly input of a list of coordinates or place names (please note, if no supplemental data is desired, an empty link will allow the workflow to function). The Mapping Service workflow was created to assist in generating a map of where a series of interviews took p... Rating: 5.0 / 5 (1 rating) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 15 times \| Downloaded: 6 times Tags (4): coordinates \| ist600 \| mapping service \| workflow	View Download (v2)
Taverna 2 Original Uploader Gstalloch	A Comparison of China and US populations (v2) Created: 28/11/11 @ 16:51:34 \| Last updated: 28/11/11 @ 17:12:37 Credits: Gstalloch License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow is a comparison of China's population with the United States. It also compared the population of males and females from ages 0 - 4 to illustrate any gender gaps that may be occurring in the birth rates. The graphs are produced through the google chart API service. The data is from world population spreadsheets obtained from Gapminder.org. Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 5 times \| Downloaded: 6 times Tags (4): comparison \| google \| population \| workflow	View Download (v2)
Taverna 2 Original Uploader Anja Le Blanc	Connect flare events with proton events on Earth via propagation model (v4) Created: 15/11/11 @ 13:57:35 \| Last updated: 15/05/12 @ 13:09:09 Credits: Anja Le Blanc License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow uses flares listed in the goes_sxf_flare list, checks wether this flare is connected to Earth via the Parker spiral, and looks for proton events at earth listed in the goes_proton_event list. The flare listing and the proton listing is combinded into a VOTable output. Rating: 0.0 / 5 (0 ratings) \| Versions: 4 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 5 times \| Downloaded: 4 times Tags (8): hec \| helio \| helio event catalog \| heliophysics \| propagation \| sep \| votable \| workflow	View Download (v4)
Taverna 2 Original Uploader Anja Le Blanc	Run a Workflow on Taverna Server (local t2flow) (v1) Created: 20/02/12 @ 11:38:53 Credits: Anja Le Blanc Attributions: Run a Workflow on Taverna Server License: Creative Commons Attribution-Share Alike 3.0 Unported License Uses a local t2flow file to submit and run this workflow on the taverna server. You need a user name and password to execute this workflow. Input to the workflow which runs remotely will be requested interactively. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 4 times \| Downloaded: 0 times Tags (3): t2flow \| taverna server \| workflow	View
Taverna 2 Original Uploader Stian Soiland-Reyes	Find workflow ancestors (v1) Created: 08/05/12 @ 11:15:30 \| Last updated: 08/05/12 @ 11:19:37 Credits: Stian Soiland-Reyes License: Creative Commons Attribution 3.0 Unported License Given a t2flow file (Taverna 2 workflow), extract ancestor workflow UUIDs and search myExperiment for matching workflow entries. Note that this will also match the workflow itself and nested workflows, but does not match against other workflows having the same ancestors (but newer UUIDs). This workflow requires Taverna 2.4 or later and uses myExperiment's SPARQL endpoint, which is refreshed weekly and contains only public workflow entries. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 9 times \| Downloaded: 5 times Tags (9): ancestor \| identifier \| myexperiment \| rest \| sparql \| t2flow \| uuid \| workflow \| xpath	View Download (v1)

Packs (2)

Creator:

Paul Fisher

Pathway to Phenotype using Text Mining

Created: 10/08/09 @ 13:01:47 | Last updated: 11/08/09 @ 14:51:31

This pack contains a list of workflows and result files obtained from the analysis of candidate pathways believed to play a role in resistance to African Trypanosomiasis in the mouse model organism.

12 items in this pack

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Creator:

Kalai

Natural product likeness filter

Created: 13/05/11 @ 19:35:39 | Last updated: 29/08/11 @ 14:25:47

Reference: Natural Product-likeness Score and Its Application for Prioritization of Compound Libraries Peter Ertl,* Silvio Roggo, and Ansgar Schuffenhauer Novartis Institutes for BioMedical Research, CH-4002 Basel, Switzerland http://peter-ertl.com/reprints/Ertl-JCIM-48-68-2008.pdf The natural product likeness scorer implemented by Peter Ertl was originally devised to screen large compound libraries for natural product likeness in drug designing studies. His work...

3 items in this pack

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Files (5)

Uploader: Paul Fisher	Ondex and Taverna Tutorial Created: 22/10/09 @ 13:50:53 \| Last updated: 22/10/09 @ 13:51:51 Credits: George License: Creative Commons Attribution-Share Alike 3.0 Unported License Biological Data Integration Using Ondex and Taverna: A Tutorial 25/26th November 2009 The University of Manchester The Ondex SABR project (http://ondex.org/sabr.html) invite you to a two-day tutorial that aims to show participants how to use Ondex and Taverna to perform common biological data collection, integration and visualisation tasks. File type: Word document Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 30 times \| Downloaded: 24 times Tags: annotation \| concept \| data integration \| esearch \| eutils \| filter \| gds \| general data store \| genes \| getconcepts \| graph \| inchi \| ismb \| merge \| ondex \| ovtk \| oxl \| pubmed \| relation nieghbour \| relation type \| sub-graph \| swissprot \| terms \| text \| text mining \| unconnected \| uniprot \| workflow	View Download
Uploader: Konstantin Kozlov	ProStack Screencast: Segmentation of Images of Gene Expression Patterns Created: 20/05/10 @ 19:48:40 Credits: Konstantin Kozlov License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License ProStack (Processing of Stacks) is a platform for image processing and analysis. It implements various image processing methods as separate modules, that can be joined in a complex image processing scenario by use of a graphical user interface. This video demonstrates the workflow for extraction of quantitative information on gene expression from confocal images. ProStack home page: urchin.spbcas.ru/downloads/ProStack/ProStack.htm Download:sourceforge.net/projects/prostack/ File type: AVI video Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 7 times \| Downloaded: 6 times Tags: bioinformatics \| gene expression \| image processing \| prostack \| segmentation \| workflow	View Download
Uploader: Konstantin Kozlov	Interaction with OMERO server from ProStack - screencast Created: 03/08/10 @ 07:25:46 \| Last updated: 03/08/10 @ 07:25:49 Credits: Konstantin Kozlov License: Creative Commons Attribution-Share Alike 3.0 Unported License The modules of ProStack image processing platform are described that allow to: browse OMERO datasets, fetch an image for processing in ProStack, insert a resulting image into the dataset. File type: video/mp4 Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 5 times \| Downloaded: 7 times Tags: image processing \| omero \| prostack \| workflow	View Download
Uploader: Chrisser	Workflow compact Created: 06/10/11 @ 03:27:24 \| Last updated: 06/10/11 @ 03:27:29 Credits: Chrisser License: Creative Commons Attribution 3.0 Unported License This screenshot shows the "Elevation plot..." workflow with the nested workflows compact. img, #cubbies-overlay{ -moz-transition-property: margin, box-shadow, z-index; -moz-transition-duration: 0.1s; -webkit-transition-property: margin, box-shadow, z-index; -webkit-transition-duration: 0.1s; } .cubbies-selected{ z-index: 9999; box-shadow: 3px 3px 8px -1px blue !important; cursor: pointer !important; margin: -3px 3px 3px -3px; } .cubbies-selected:active{ box-shadow: 2px 2px 5px -1... File type: JPEG image Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 4 times \| Downloaded: 4 times Tags: photo \| r \| rest service \| weather \| web services \| workflow \| wsdl	View Download
Uploader: Chrisser	"Elevation plot..." workflow, expanded view Created: 06/10/11 @ 03:29:43 \| Last updated: 06/10/11 @ 03:29:52 Credits: Chrisser License: Creative Commons Attribution 3.0 Unported License this screenshot shows the entire workflow, with nested workflows expanded img, #cubbies-overlay{ -moz-transition-property: margin, box-shadow, z-index; -moz-transition-duration: 0.1s; -webkit-transition-property: margin, box-shadow, z-index; -webkit-transition-duration: 0.1s; } .cubbies-selected{ z-index: 9999; box-shadow: 3px 3px 8px -1px blue !important; cursor: pointer !important; margin: -3px 3px 3px -3px; } .cubbies-selected:active{ box-shadow: 2px 2px 5px -1px darkblue !important; ma... File type: JPEG image Rating: 0.0 / 5 (0 ratings) \| Comments: 0 \| Viewed: 1 time \| Downloaded: 2 times Tags: photo \| regex \| regular_expressions \| rest \| rest service \| string_constant \| string_wrangling \| weather \| web services \| web_retrieval \| web_services \| workflow \| wsdl	View Download